Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120877.seq
         (647 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g45830.1 68416.m04960 expressed protein                             29   2.0  
At2g01500.1 68415.m00073 homeobox-leucine zipper transcription f...    29   2.0  
At1g52780.1 68414.m05966 expressed protein                             27   8.1  

>At3g45830.1 68416.m04960 expressed protein
          Length = 1298

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 20/64 (31%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
 Frame = +3

Query: 453 EHVRGRGDKAHSFAERRVGMMRE---VDQYLNSDTPDYTIESLNA---PGQTV*FFR*NA 614
           EH+   G + HSF  ++ G MR+   ++ + + D  D  I SL+          FFR N 
Sbjct: 592 EHIYAPGTEKHSFKSKQKGKMRDRSPLENFSSRDFEDGPITSLSEFQDRNNRKEFFRSNR 651

Query: 615 NKKT 626
           N +T
Sbjct: 652 NSQT 655


>At2g01500.1 68415.m00073 homeobox-leucine zipper transcription
           factor family protein similar to wuschel protein
           (GI:22087128) [Arabidopsis thaliana]
          Length = 271

 Score = 29.5 bits (63), Expect = 2.0
 Identities = 16/63 (25%), Positives = 32/63 (50%), Gaps = 5/63 (7%)
 Frame = +1

Query: 211 WNATRTNLTTIQTKFRN-----FTERIETCAGR*RQIENVHVQRYHHQFLEHEIGLQIRL 375
           WN T   +TT++  +R+      TE+I+  A + R+   +  +   + F  H+   +++ 
Sbjct: 62  WNPTPEQITTLEELYRSGTRTPTTEQIQQIASKLRKYGRIEGKNVFYWFQNHKARERLKR 121

Query: 376 RRR 384
           RRR
Sbjct: 122 RRR 124


>At1g52780.1 68414.m05966 expressed protein 
          Length = 1059

 Score = 27.5 bits (58), Expect = 8.1
 Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
 Frame = -1

Query: 317 CTFSICLYRPAQVSIRSVKFL--NFVCI-VVKFVRVAFQP-QFERLVD 186
           C   ICLY P   SIR    L   F C+   K +  +F P  FE+LV+
Sbjct: 445 CNARICLYIPTTFSIRQRSILVGTFSCLNTEKNLTPSFFPLSFEKLVE 492


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,205,792
Number of Sequences: 28952
Number of extensions: 261829
Number of successful extensions: 704
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1344285648
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)