Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120874.seq
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.08c |||U2 snRNP-associated protein Lea1 |Schizosaccharo...    26   3.8  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    26   5.1  
SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces...    26   5.1  
SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3' ss-tail|S...    25   6.7  
SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2 |Schiz...    25   6.7  
SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomy...    25   8.9  
SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr...    25   8.9  

>SPBC1861.08c |||U2 snRNP-associated protein Lea1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 239

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 13/41 (31%), Positives = 18/41 (43%)
 Frame = -2

Query: 572 WRISSTHVLSRSNWLYYAR*RVKEVLSEIYAPKSLEKMLNG 450
           WRI S H+L         R R +EV  +I  P  +   + G
Sbjct: 136 WRIPSLHILDFERVRRNERLRAEEVFGQIQNPTEIASSIMG 176


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 9/25 (36%), Positives = 16/25 (64%)
 Frame = +2

Query: 263 SKAPDTSLSFSISEYERVLSNIWSI 337
           S + D +++FSI+     L N+WS+
Sbjct: 188 SSSKDDAITFSINRNNNFLGNLWSL 212


>SPBC1734.16c |pst3||SIN3 family co-repressor|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1154

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = +3

Query: 51  YKCADLAYGKCPDEWK 98
           ++C  L Y K PD WK
Sbjct: 493 FECISLTYRKLPDSWK 508


>SPCC1322.01 ||SPCC23B6.06|3'-5' exonuclease for RNA 3'
           ss-tail|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 957

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 14/60 (23%), Positives = 29/60 (48%)
 Frame = +3

Query: 147 IRSALKNSFASETILKYCIQSCAVGPRSSKSFNFILIYEVKHLILHYHFQYLNMKECYLI 326
           I + L NS +   +LK+  ++    P +  S    L+ E KH ++  H  +  +++ Y +
Sbjct: 276 IPNKLDNSASFSDLLKFVYKTSKPSPYAKISLLHFLLTESKHFLISDHI-FSEIQKVYFL 334


>SPAC12B10.14c |ppk2||serine/threonine protein kinase Ppk2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 665

 Score = 25.4 bits (53), Expect = 6.7
 Identities = 11/36 (30%), Positives = 21/36 (58%)
 Frame = +2

Query: 317 LSNIWSIFMIKSAPMISLISIVFNIVIAKASWSSVC 424
           L+NIWS+F  K  P   L +++     ++ + +S+C
Sbjct: 455 LNNIWSVFEYKD-PSTKLSALIPKYFFSELNIASIC 489


>SPAC16C9.01c ||SPAC4G8.14c|carbohydrate kinase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 361

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = -1

Query: 330 HILDSTLSYSDIENDNEVSGA 268
           HIL   L Y DI + NEV  A
Sbjct: 174 HILQKALKYCDIFSPNEVDSA 194


>SPBC1861.05 |||carbohydrate kinase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 747

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = -1

Query: 372 INDIMGADLIINIDHILDSTLSYSDIEND 286
           IND  G  L+   D  +   LSYS+I++D
Sbjct: 489 INDCNGNLLLAGADMAIMENLSYSEIKDD 517


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,571,261
Number of Sequences: 5004
Number of extensions: 50772
Number of successful extensions: 182
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 182
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)