Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120874.seq
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_0736 - 5600201-5600374,5600455-5600563,5601075-5601196,560...    27   9.2  

>07_01_0736 -
           5600201-5600374,5600455-5600563,5601075-5601196,
           5602859-5602935,5603349-5603487,5604306-5604618,
           5605084-5605394,5607245-5609141,5609239-5609374,
           5609519-5609607,5610424-5610507,5611112-5611191,
           5611312-5611446,5612340-5612585
          Length = 1303

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 12/33 (36%), Positives = 21/33 (63%)
 Frame = +3

Query: 216 VGPRSSKSFNFILIYEVKHLILHYHFQYLNMKE 314
           +G RS  SF + L YE++H+ LHY    +++ +
Sbjct: 655 LGVRSLSSFQYEL-YEIQHVQLHYEVSCISIPQ 686


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,984,010
Number of Sequences: 37544
Number of extensions: 294984
Number of successful extensions: 651
Number of sequences better than 10.0: 1
Number of HSP's better than 10.0 without gapping: 636
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 651
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)