Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120874.seq
         (624 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical pr...    28   4.7  
Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical pr...    28   4.7  
AY455927-3|AAR26304.1|  347|Caenorhabditis elegans phosphoglucos...    28   4.7  
AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical...    28   6.2  

>Z81130-8|CAB03416.1|  347|Caenorhabditis elegans Hypothetical
           protein T23G11.2 protein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 157 AERMGDWKAHLSCVKEMLPYFHSSGHFPYAKSAHLYLQDMMQLQ 26
           A+ +G +K  L C  E++P+++    F Y+K+ H   Q   +L+
Sbjct: 126 AKTIGVYKLSLECKTELIPFYNK---FGYSKNLHFLDQRFEELE 166


>Z66500-1|CAA91303.1|  325|Caenorhabditis elegans Hypothetical
           protein T05C12.1 protein.
          Length = 325

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 16/55 (29%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
 Frame = -3

Query: 247 KLKDFEERGPTAQLWIQYFNMVSLAKEFL--RAERMGDWKAHLSCVKEMLPYFHS 89
           ++ D  E+GP   LW  Y+++  L +  L  R     D  AH+  + +    FHS
Sbjct: 221 RMHDRREQGPVDDLWCLYYSLGELIEGCLPWRDIESADEMAHVKKILKHEDIFHS 275


>AY455927-3|AAR26304.1|  347|Caenorhabditis elegans
           phosphoglucosamine acetyltransferaseprotein.
          Length = 347

 Score = 28.3 bits (60), Expect = 4.7
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = -3

Query: 157 AERMGDWKAHLSCVKEMLPYFHSSGHFPYAKSAHLYLQDMMQLQ 26
           A+ +G +K  L C  E++P+++    F Y+K+ H   Q   +L+
Sbjct: 126 AKTIGVYKLSLECKTELIPFYNK---FGYSKNLHFLDQRFEELE 166


>AC087081-11|AAK66034.2|  328|Caenorhabditis elegans Hypothetical
           protein Y82E9BL.7 protein.
          Length = 328

 Score = 27.9 bits (59), Expect = 6.2
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = -3

Query: 175 AKEFLRAERMGDWKAHLSCVKEMLPYFHSSG 83
           AK++   E++  WK  L  V  +LP+F S G
Sbjct: 162 AKKWNHVEKLEFWKVPLDFVLSILPHFKSQG 192


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,113,134
Number of Sequences: 27780
Number of extensions: 278252
Number of successful extensions: 630
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 621
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 630
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1363963182
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)