Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120874.seq
         (624 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At3g51210.1 68416.m05606 flavonol 3-sulfotransferase-related con...    29   3.3  
At5g67470.1 68418.m08507 formin homology 2 domain-containing pro...    28   4.4  
At3g46550.1 68416.m05053 fasciclin-like arabinogalactan family p...    28   4.4  
At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to SW...    28   5.8  

>At3g51210.1 68416.m05606 flavonol 3-sulfotransferase-related
           contains weak similarity to Swiss-Prot:P52836 flavonol
           3-sulfotransferase (F3-ST) [Flaveria chloraefolia]
          Length = 67

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 172 KEFLRAERMGDWKAHLSCVKE 110
           K+F R  ++GDWK HLS   E
Sbjct: 27  KDFFRDGKVGDWKNHLSVTLE 47


>At5g67470.1 68418.m08507 formin homology 2 domain-containing
           protein / FH2 domain-containing protein contains formin
           homology 2 domain, Pfam:PF02181
          Length = 899

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 19/59 (32%), Positives = 33/59 (55%), Gaps = 2/59 (3%)
 Frame = -3

Query: 175 AKEFLRAERMGDWKAHLSCVKEMLPYFHSSGHFPYAKSAHLYL--QDMMQLQDSMDPEV 5
           A+E +R  + G+ KA LS VKE+  YFH +     A    +++  +D + + D++  EV
Sbjct: 791 AEEEIRKIKGGERKA-LSMVKEVTEYFHGNAAREEAHPLRIFMVVRDFLGVLDNVCKEV 848


>At3g46550.1 68416.m05053 fasciclin-like arabinogalactan family
           protein similar to fasciclin-like arabinogalactan
           protein FLA8 [Arabidopsis thaliana]
           gi|10880493|gb|AAG24276
          Length = 420

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/35 (34%), Positives = 22/35 (62%)
 Frame = -3

Query: 622 ISPPPDGSEVSKIIVRLGGFHLLMSYLGAIGYIMQ 518
           +SPPP G  +++I++    F++ +S L A G I +
Sbjct: 199 LSPPPAGINLTQILINGHNFNVALSLLVASGVITE 233


>At4g32980.1 68417.m04691 homeobox protein (ATH1) identical to
           SWISS-PROT:P48731 homeobox protein ATH1. [Arabidopsis
           thaliana]
          Length = 473

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 13/33 (39%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
 Frame = -2

Query: 539 SNWLYYAR*RV-KEVLSEIYAPKSLEKMLNGHL 444
           SNW   AR R+ K ++ E+YA  +  K+ N H+
Sbjct: 420 SNWFINARVRLWKPMIEEMYAEMNKRKLNNSHI 452


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,120,555
Number of Sequences: 28952
Number of extensions: 248739
Number of successful extensions: 625
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 612
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 625
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1265787216
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)