Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120873.seq
         (625 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.     24   0.90 
AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory recept...    22   4.8  

>AY884065-1|AAX84206.1|  697|Tribolium castaneum laccase 1 protein.
          Length = 697

 Score = 24.2 bits (50), Expect = 0.90
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +1

Query: 130 RFTHILRYQNALSKSCY 180
           R+T +L + + LSK+CY
Sbjct: 58  RYTFLLEWYHTLSKACY 74


>AM292322-1|CAL23134.1|  373|Tribolium castaneum gustatory receptor
           candidate 1 protein.
          Length = 373

 Score = 21.8 bits (44), Expect = 4.8
 Identities = 14/39 (35%), Positives = 17/39 (43%)
 Frame = +2

Query: 128 IGLLIYSDIKMH*ASLAIGNNSQEYIKGSHN*FDYVFTT 244
           I  LI  D+K+   SL I   +Q      H    YVF T
Sbjct: 106 INKLIEFDVKLQNVSLIINYENQRTRSRIHLFVRYVFVT 144


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 139,637
Number of Sequences: 336
Number of extensions: 3100
Number of successful extensions: 3
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 15979473
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)