Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120873.seq
         (625 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces p...    30   0.31 
SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyce...    30   0.31 
SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyce...    26   5.1  
SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   8.9  
SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr 2|||Ma...    25   8.9  

>SPAC17A2.06c |vps8||WD repeat protein Vps8|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1272

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 12/30 (40%), Positives = 19/30 (63%)
 Frame = -2

Query: 132 PILLSTFNEHKDEDILTHLQ*MTNNHQVIL 43
           P+ L T N+H ++ +LTHL    N+  V+L
Sbjct: 173 PLQLFTINQHSEDSVLTHLVFNGNSDDVLL 202


>SPCC1620.11 |mug87||nucleoporin Nic96 homolog|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 851

 Score = 29.9 bits (64), Expect = 0.31
 Identities = 14/48 (29%), Positives = 26/48 (54%)
 Frame = +2

Query: 479 YRPNNGSHPGKYYFVSCH*LTHSQYSLQYSIQYFNSNKLHLFIICIWY 622
           Y  NNGS+P  Y+F+      + + ++ +   YF ++ +H  I C +Y
Sbjct: 466 YFTNNGSNPVMYFFLLMLCGLYER-AINFLYPYFPTDAVHFAITCAYY 512


>SPAC26A3.05 |chc1||clathrin heavy chain Chc1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1666

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 17/57 (29%), Positives = 31/57 (54%), Gaps = 2/57 (3%)
 Frame = +3

Query: 87   RYLHLYV--H*MCLAISVYSYTPISKCIKQVLLLEIIHRSTSKVLIINLIMSLQHMN 251
            R L+ Y+  H M L   + + TP    I    ++ I  +S +  LI+N ++++QH+N
Sbjct: 1401 RALNFYLEQHPMLLTDLLAALTPR---IDHPRVIRIFEKSENTPLILNFMVAIQHLN 1454


>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/37 (37%), Positives = 18/37 (48%), Gaps = 4/37 (10%)
 Frame = +1

Query: 430 YFLY----YIPKTTLVYKILISTQQWVPSWKVLFCIL 528
           YFLY    Y   T+LV   +     W+  W+VLF  L
Sbjct: 414 YFLYFSFVYRAMTSLVQDGIRMEYHWLELWRVLFSFL 450


>SPBC27B12.06 |gpi13||pig-O |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 918

 Score = 25.0 bits (52), Expect = 8.9
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = +3

Query: 117 CLAISVYSYTPISKCIKQVLLLEIIHRSTSKVLIINLIMS 236
           C++I ++S+ P+SK  K   L+ +   S S +L  NL++S
Sbjct: 827 CISIPLFSFEPLSK--KNRFLINLFRFSFSFIL-YNLLIS 863


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,414,195
Number of Sequences: 5004
Number of extensions: 47300
Number of successful extensions: 98
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)