Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120872.seq
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    29   0.74 
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    27   2.3  
SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces...    27   2.3  
SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual     25   9.1  
SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyc...    25   9.1  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 28.7 bits (61), Expect = 0.74
 Identities = 15/54 (27%), Positives = 30/54 (55%), Gaps = 1/54 (1%)
 Frame = +3

Query: 315 LITKEGVIQLIMKSKLPYAVELQAWLLEEVIPQWL-CTGKYAPAVKMDTNYGVI 473
           L+ K+GV+ L+ K KLP++V  +  ++     ++L    K+     +D+ Y V+
Sbjct: 542 LLVKDGVVHLVDKVKLPFSVSQKDMIIAGGRKEFLELLDKFEMLDMLDSGYPVV 595


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 15/60 (25%), Positives = 33/60 (55%)
 Frame = +1

Query: 82  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTRL 261
           E +FTL+ ++E G  + +    DIA +L++++ +Q         Y+  Y+  G+ P++ +
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQIRTQYEGSGYR--YNSLGAWPFSNI 443


>SPAC1486.04c |alm1||medial ring protein Alm1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1727

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/35 (37%), Positives = 22/35 (62%)
 Frame = +3

Query: 447 KMDTNYGVIEELNKKLAFASEVWAEANEKIIHFDQ 551
           K++ +   +++L KKLA  ++   E NEKI  F+Q
Sbjct: 218 KLEVSSRQVQDLEKKLAGLAQQNTELNEKIQLFEQ 252


>SPAC1F12.09 |gpi17||pig-S|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 554

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 11/40 (27%), Positives = 22/40 (55%)
 Frame = +1

Query: 190 VIVNVDKKYKTTYSESGSIPYTRLQTTWSSKVTHCTCSRT 309
           +++ +   +KTT+ E  S+P+  ++   S+  TH   S T
Sbjct: 83  ILLAIPVWWKTTHYERSSLPFEDMENAPSTVQTHLRFSPT 122


>SPCC594.01 ||SPCC736.16|DUF1769 family protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 791

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/60 (30%), Positives = 29/60 (48%)
 Frame = +1

Query: 157 SSLKYVNCKQAVIVNVDKKYKTTYSESGSIPYTRLQTTWSSKVTHCTCSRTQCSSPRRVL 336
           S+L Y N   +  VNV         E+GS+P  R QT+ +S V      +   S+P +++
Sbjct: 528 STLSYANDSASSAVNVA-------GETGSLPPLREQTSITSGVPPSNRLKKHVSTPEKIV 580


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,504,760
Number of Sequences: 5004
Number of extensions: 50397
Number of successful extensions: 156
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)