Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120872.seq
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0788 + 7192937-7192994,7193074-7193160,7193242-7193307,719... 31 1.0
04_01_0316 + 4251465-4251590,4251664-4251719,4252973-4253087,425... 30 1.8
05_07_0354 - 29507068-29507170,29507406-29507431,29508264-295083... 29 2.3
11_01_0469 + 3638493-3641166,3641286-3641653 28 5.4
09_06_0311 + 22218219-22218421,22219157-22219422,22219881-222200... 28 5.4
03_02_0877 - 12072996-12073285,12074312-12074615,12074699-120748... 28 5.4
03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775 28 7.1
07_01_0846 + 6873655-6873783,6875175-6875368,6875923-6876007,687... 27 9.4
03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-13... 27 9.4
01_01_0765 + 5917163-5918212 27 9.4
>12_01_0788 +
7192937-7192994,7193074-7193160,7193242-7193307,
7193447-7193555,7194522-7194785,7194919-7195006,
7195085-7195708,7196017-7196140,7196195-7196337,
7196434-7196649,7196781-7196873,7196952-7197032,
7197120-7197504,7197599-7197636
Length = 791
Score = 30.7 bits (66), Expect = 1.0
Identities = 11/36 (30%), Positives = 21/36 (58%)
Frame = +3
Query: 432 YAPAVKMDTNYGVIEELNKKLAFASEVWAEANEKII 539
Y P K+ N+ V++++N + F EVW+ +E +
Sbjct: 359 YVPDTKLKGNWQVVQKVNHRHLFDPEVWSAGSESAL 394
>04_01_0316 +
4251465-4251590,4251664-4251719,4252973-4253087,
4253174-4253417,4254189-4254325,4255006-4255065,
4255336-4255460,4256021-4256048,4256267-4256336,
4256513-4256565,4256966-4257025,4257498-4257544,
4257617-4257741,4258572-4258686,4258778-4258826,
4260415-4260471,4261126-4261209,4261363-4261442,
4262005-4262094,4262252-4262375
Length = 614
Score = 29.9 bits (64), Expect = 1.8
Identities = 12/36 (33%), Positives = 22/36 (61%)
Frame = +1
Query: 55 VKIGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASS 162
V+ G FK ED + L++ N++ +FVA ++ +S
Sbjct: 332 VRCGNFKISEDYQAVNVTLKKDNMRTEFVAAEVDNS 367
>05_07_0354 -
29507068-29507170,29507406-29507431,29508264-29508301,
29508722-29508825,29509005-29509024,29509251-29509299,
29510319-29510406,29510463-29510562,29510660-29510737,
29512688-29512804,29513718-29513821,29514497-29514569,
29514904-29514981,29515091-29515215,29515278-29515341,
29515439-29515597,29515950-29516048,29516496-29516624,
29517010-29517075,29517160-29517304,29517379-29517500,
29517683-29517838,29517918-29518029,29518891-29519036,
29519148-29519252,29519391-29519540,29519703-29519776,
29519902-29520055,29520142-29520408
Length = 1016
Score = 29.5 bits (63), Expect = 2.3
Identities = 14/41 (34%), Positives = 25/41 (60%)
Frame = +3
Query: 372 VELQAWLLEEVIPQWLCTGKYAPAVKMDTNYGVIEELNKKL 494
++L+ L+E V +W CT K ++++DT +E+ KKL
Sbjct: 688 LKLKDLLIEAVALKWSCTQKNMASIELDTKIWEMEKDVKKL 728
>11_01_0469 + 3638493-3641166,3641286-3641653
Length = 1013
Score = 28.3 bits (60), Expect = 5.4
Identities = 17/57 (29%), Positives = 29/57 (50%), Gaps = 2/57 (3%)
Frame = +3
Query: 372 VELQAWLLEEVIPQWLCTGKYAPAVKMDTNY--GVIEELNKKLAFASEVWAEANEKI 536
V L A L V+P+WL T K V + +N+ G I L+ E++ ++N+ +
Sbjct: 395 VALGANLFTGVLPEWLGTIKTLQKVSLGSNFFTGAIPSSFSNLSQLGELYLDSNQLV 451
>09_06_0311 + 22218219-22218421,22219157-22219422,22219881-22220050,
22220149-22220365,22220798-22221021,22221559-22221738,
22221875-22222013,22222107-22222255,22223394-22223505,
22223998-22224506,22224661-22224784,22224904-22225178,
22225507-22225626,22225707-22225769,22225861-22226052,
22226381-22226440,22226535-22226738,22226926-22227051,
22227093-22227254,22227357-22227476,22227665-22227820,
22227895-22227957,22228041-22228168,22228524-22228920,
22229442-22229544,22229646-22229776,22230096-22230167,
22230472-22230553,22231083-22231190,22231288-22231429,
22231659-22231698,22231746-22231876,22232215-22232301,
22232395-22232605,22232687-22232741,22232836-22232927,
22233011-22233071,22233361-22233719
Length = 2010
Score = 28.3 bits (60), Expect = 5.4
Identities = 9/24 (37%), Positives = 15/24 (62%)
Frame = +3
Query: 504 SEVWAEANEKIIHFDQCVGDRQRR 575
S W +NEK++H ++ G+ Q R
Sbjct: 1589 SSQWLSSNEKVVHINRITGEAQAR 1612
>03_02_0877 -
12072996-12073285,12074312-12074615,12074699-12074871,
12075299-12075434,12076327-12076788,12076882-12077189,
12077724-12078105
Length = 684
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/39 (38%), Positives = 21/39 (53%)
Frame = +1
Query: 514 GPRPTKKLYILTNALVTANAGLVQANTMLNEGAPRKRRS 630
G + +K Y T A + NAGLV A L++ R+R S
Sbjct: 559 GFKDVRKNYNYTEATLAGNAGLVAALVALSDRTRRRRSS 597
>03_06_0538 + 34591897-34593703,34595436-34595506,34596328-34598775
Length = 1441
Score = 27.9 bits (59), Expect = 7.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 388 GCWRR*FRSGCARASTRRPSRWTQIMV*LKS 480
GCWR GC R S+ +R T MV +K+
Sbjct: 979 GCWRALPTGGCVRNSSNDETRVTTTMVEVKN 1009
>07_01_0846 +
6873655-6873783,6875175-6875368,6875923-6876007,
6876041-6876241,6876546-6876644,6876938-6876976
Length = 248
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/56 (26%), Positives = 27/56 (48%)
Frame = -1
Query: 302 LQVQWVTLLDHVVWSRVYGIDPDSLYVVLYFLSTLTITACLQFTYFKLLAMSLATN 135
L V W L H +W+ I P+ Y L+ LS L + +Q F + + ++++
Sbjct: 95 LDVAWFILFSHAIWN----ITPEEKYGQLFVLS-LKLALWMQIIGFSMYRLGVSSS 145
>03_01_0016 + 131141-131236,131743-132043,132125-132341,132440-132773,
132883-132996,133065-133193,133293-133469,133555-133746,
134844-134981,135327-135559,135900-136003,136633-136727,
136817-137053,137801-137922,138252-138354,138750-138826,
138909-139017,139107-139253,139953-140000,140292-140492,
140589-140738,140917-141002,141088-141193,141278-141373,
141759-141911,142647-142819,142923-142986,144056-144193,
144548-144595,144690-144836,144907-144968,146540-146645,
147357-147461,147548-147679,147765-147974,148070-148171,
148261-148398
Length = 1729
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/36 (38%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +1
Query: 103 YVLEQGNLQVKF----VAKDIASSLKYVNCKQAVIV 198
Y LE N +K +A+ IA +L Y NCK+ + V
Sbjct: 1174 YALESDNNTIKSSVHSIARTIAGNLAYANCKEPLCV 1209
>01_01_0765 + 5917163-5918212
Length = 349
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +1
Query: 238 GSIPYTRLQTTWSSKVTHCTCSRTQCSSPRRVLS 339
GS+ + RL +T S++ C C + QC V+S
Sbjct: 307 GSMRFARLGSTVSTRSAQCQCRKHQCWKKAVVVS 340
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,145,615
Number of Sequences: 37544
Number of extensions: 356888
Number of successful extensions: 918
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 918
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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