Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120872.seq
         (632 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g01640.1 68417.m00213 hypothetical protein                          31   0.64 
At2g34280.1 68415.m04194 S locus F-box-related / SLF-related con...    31   0.64 

>At4g01640.1 68417.m00213 hypothetical protein 
          Length = 300

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -1

Query: 374 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRVYGID 240
           +S REL + N LD+ L   E     QV W    DH  W  +Y ID
Sbjct: 185 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 228


>At2g34280.1 68415.m04194 S locus F-box-related / SLF-related
           contains Pfam PF00646: F-box domain; contains weak hit
           to TIGRFAM TIGR01640 : F-box protein interaction domain;
           weakly similar to  self-incompatibility (S-) locus F-box
           (GI:29420811) [Prunus mume]
          Length = 391

 Score = 31.1 bits (67), Expect = 0.64
 Identities = 18/45 (40%), Positives = 22/45 (48%)
 Frame = -1

Query: 374 HSVRELALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRVYGID 240
           +S REL + N LD+ L   E     QV W    DH  W  +Y ID
Sbjct: 276 YSSRELIMCN-LDDRLCVSEKMWPNQVIWSLDSDHKTWKEIYSID 319


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,142
Number of Sequences: 28952
Number of extensions: 271378
Number of successful extensions: 686
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 677
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 686
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1295224128
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)