Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120871.seq
         (627 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19C2.09 |sre1||sterol regulatory element binding protein Sre...    30   0.24 
SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit Nse6|Schizosa...    27   2.2  
SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|c...    27   2.9  
SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large...    26   3.9  
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ...    26   3.9  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    26   3.9  
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces...    26   3.9  
SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate reductase/...    26   5.1  
SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase Met9|...    25   6.8  
SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyce...    25   6.8  
SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyce...    25   9.0  
SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain p...    25   9.0  
SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces pom...    25   9.0  

>SPBC19C2.09 |sre1||sterol regulatory element binding protein
           Sre1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 900

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 22/82 (26%), Positives = 38/82 (46%)
 Frame = -3

Query: 508 P*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTFNR 329
           P + ++ R  LL   +L P  T  S++   +A   + N L  C+  K    ++L    ++
Sbjct: 733 PKNSSIIRHALLAKLVLFPENTADSLNEVLAA---YKNTLDLCSQDKRKQSSVLKINLSK 789

Query: 328 LFSSDSTDSLLCPKLGDASVKE 263
           LF+  S  SL   +LG   V +
Sbjct: 790 LFTLHSCLSLALQRLGYGDVSK 811


>SPAC11E3.08c |nse6||Smc5-6 complex non-SMC subunit
           Nse6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 522

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/70 (25%), Positives = 32/70 (45%), Gaps = 3/70 (4%)
 Frame = -3

Query: 472 VPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSFTF---NRLFSSDSTDS 302
           +P  L P   +S+I     +  +W+ +LS  +      R  ++FT     +  + DS  S
Sbjct: 318 LPISLNPDFLISNIHKVSESPRVWVTILSSLSRSCQKFRKKIAFTLFVGKQSKNDDSDFS 377

Query: 301 LLCPKLGDAS 272
            LC +L + S
Sbjct: 378 SLCQRLDEIS 387


>SPAC513.05 |ams1||alpha-mannosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1077

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 19/56 (33%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +3

Query: 180 KTNHVENRVIDRFARTDLSLLDECINLNSLTEASPSLGQ--SSESVESDENKRLNV 341
           K   + N +++ F   DLS ++EC NL     A   LG    SE+V    N + NV
Sbjct: 233 KARQICNDIMNTFHPNDLSTINECRNL-----AKAFLGNDIDSEAVFEKNNDKANV 283


>SPBC651.08c |rpc1||DNA-directed RNA polymerase III complex large
            subunit Rpc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1405

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +3

Query: 183  TNHVENRVIDRFARTDLSLLDECINLNSLTEASPSLGQSSESVESDENKR 332
            T+H+ N    RFA+  +  + ECI L  L     ++ Q     E +E ++
Sbjct: 1339 TDHLFNAAA-RFAKDSIEGISECIVLGKLAPIGTNVFQLIRRTEEEEEQK 1387


>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 332

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 10/27 (37%), Positives = 18/27 (66%)
 Frame = -3

Query: 601 TMDLNSLISKFAVPRVHGHITRCAGRV 521
           T+++N L+     P+ HG ++RC GR+
Sbjct: 267 TLNVNRLVMGHT-PQFHGIVSRCEGRI 292


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/39 (30%), Positives = 18/39 (46%)
 Frame = +2

Query: 35  QFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 151
           Q + A  + ++L    +   P  WEND    LLK  H +
Sbjct: 750 QLMVANLDTYSLDCYEIHEFPSEWENDYAPFLLKEHHKV 788


>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1155

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 12/49 (24%), Positives = 21/49 (42%)
 Frame = +2

Query: 5   FGSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 151
           FG+    +C+      +  FT S K        W   N +V ++H +N+
Sbjct: 122 FGNISAIFCDDKFPYAYATFTFSDKPSFTSIYRWNVTNSNVTIEHFYNV 170


>SPAC4G9.09c |arg11||N-acetyl-gamma-glutamyl-phosphate
           reductase/acetylglutamate kinase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 885

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 29/102 (28%), Positives = 44/102 (43%)
 Frame = +3

Query: 312 ESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLG 491
           E+   + LNV   NA +    +A     L  +Y+ EK   I+     G  K   +SI+L 
Sbjct: 233 ETASGQLLNV---NADITAGELARVLKPLKVVYLNEKGGLIN-----GETKKKISSIYLD 284

Query: 492 TVYDYGLNRQTRPAHLVM*PWTRGTANFDIKEFKSMVYCIPK 617
             YD GL +Q         PW +      IKE K ++  +P+
Sbjct: 285 REYD-GLMKQ---------PWVKYGTKLKIKEIKELLDTLPR 316


>SPAC56F8.10 |met9|met5|methylenetetrahydrofolate reductase
           Met9|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 603

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
 Frame = -3

Query: 490 PRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAM-RKL 365
           P + ++ PT++E +  ++  D  +S    W N  SP ++ RKL
Sbjct: 514 PNREIIQPTIVESTSFLAWKDEAYSLGMEWANAYSPDSISRKL 556


>SPCC162.06c |||vacuolar sorting protein Vps60|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 210

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 18/49 (36%), Positives = 28/49 (57%), Gaps = 2/49 (4%)
 Frame = +3

Query: 264 SLTEASPSLGQSSESVESDENKRLNVKLN--NARVANLRIAHGDNKLSQ 404
           SLT+A  SL + S+SVE  +  +L+ +L+    ++AN R   G   L Q
Sbjct: 16  SLTDAIDSLDKRSDSVEV-KIAKLDAQLSVFQQKIANTRPGPGQTALKQ 63


>SPCC1235.02 |bio2|SPCC320.01c|biotin synthase|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 363

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
 Frame = -3

Query: 625 RYTFGIQ*T--MDLNSLISKFAVPRVHGHITRCAGRVWR 515
           RY  G++ T  M ++ ++ K  + +  G    C G  WR
Sbjct: 81  RYNTGVKATKLMKIDEVLEKAKIAKAKGSTRFCMGSAWR 119


>SPBC19F5.05c |ppp1|SPBC25D12.01c|pescadillo-family BRCT domain
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 607

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/31 (41%), Positives = 17/31 (54%)
 Frame = +3

Query: 375 IAHGDNKLSQMYIAEKPLSIDDIVKEGSNKV 467
           I HG+NK ++  IA     I DIV   +N V
Sbjct: 274 IVHGNNKNARKNIATLKSKIRDIVNSDANVV 304


>SPAC821.13c ||SPAC955.01c|P-type ATPase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1562

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 13/40 (32%), Positives = 22/40 (55%)
 Frame = +3

Query: 381 HGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVY 500
           +G  KL  +   E PLS +D++  GSN   T+ +F   ++
Sbjct: 508 NGSMKLDSIQ-GEIPLSNNDVLYRGSNLRNTSELFALVIF 546


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,585,582
Number of Sequences: 5004
Number of extensions: 51711
Number of successful extensions: 146
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 146
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)