Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120871.seq
(627 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773 30 1.7
09_06_0016 - 20240358-20240797,20241040-20241131,20241132-202412... 29 4.0
09_02_0060 + 3729613-3729863,3730377-3730392 28 5.3
04_04_1401 + 33279092-33279286,33280223-33280306,33280459-332805... 28 5.3
03_05_0714 - 27076881-27077218,27077332-27077482,27077768-270779... 28 5.3
02_05_0642 + 30576158-30576289,30576436-30576503,30577167-305774... 28 5.3
01_04_0010 - 15058175-15058195,15058320-15058430,15059031-150592... 28 5.3
08_02_1525 + 27661094-27661801 28 7.0
04_03_0457 + 16113087-16113249,16113468-16113498,16114138-161142... 28 7.0
10_08_1063 - 22628642-22628716,22628806-22629012,22629325-226294... 27 9.2
>03_02_0395 - 8091389-8093119,8093637-8093720,8093754-8094773
Length = 944
Score = 29.9 bits (64), Expect = 1.7
Identities = 17/72 (23%), Positives = 34/72 (47%)
Frame = +3
Query: 243 DECINLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEK 422
D I+ + L + LG E + DE RL + + A+ + GDN M+ ++
Sbjct: 447 DHNISKDELVQCWTGLGLLPELADVDEAHRLAHSVISVLEASRLVERGDNHRYNMFPSDT 506
Query: 423 PLSIDDIVKEGS 458
+ + D+V++ +
Sbjct: 507 HVRLHDVVRDAA 518
>09_06_0016 -
20240358-20240797,20241040-20241131,20241132-20241250,
20241398-20241561,20241664-20241757,20242048-20242080,
20242361-20242478,20242712-20242812,20242882-20242962,
20243138-20243335,20243411-20243545,20243662-20243667,
20243727-20243805,20243845-20243896,20244328-20244388,
20244475-20244532,20245137-20245225,20246305-20246799
Length = 804
Score = 28.7 bits (61), Expect = 4.0
Identities = 11/48 (22%), Positives = 23/48 (47%)
Frame = +2
Query: 8 GSNVINYCEQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNL 151
G+NV+ CE A+ + +S +V + W + L+ L ++ +
Sbjct: 186 GANVVKSCESLFAALVGLTAVSLHLVETFLIKWRKEKLTQLTVYVFQM 233
>09_02_0060 + 3729613-3729863,3730377-3730392
Length = 88
Score = 28.3 bits (60), Expect = 5.3
Identities = 11/25 (44%), Positives = 14/25 (56%)
Frame = -1
Query: 372 ANWPPGRY*ALRLIVCSRLIPPIRC 298
A WPP RY + R C R +P + C
Sbjct: 35 AKWPPSRYRSYR-ATCCRAVPSLLC 58
>04_04_1401 +
33279092-33279286,33280223-33280306,33280459-33280524,
33280945-33281028,33281181-33281246,33281719-33281802,
33281955-33282020,33282323-33282388,33282667-33282726,
33282805-33282888,33282968-33283111,33283552-33283586,
33283694-33283746,33283828-33283928,33284516-33284974
Length = 548
Score = 28.3 bits (60), Expect = 5.3
Identities = 17/64 (26%), Positives = 28/64 (43%)
Frame = +3
Query: 315 SDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGT 494
SD+NK + KL + ++ R GDNK +K +D + +N + L
Sbjct: 202 SDDNKSDSCKLRDKTTSDDRSKSGDNKYDSCKTRDKKPIVDLADEFENNTIKKKITLLSE 261
Query: 495 VYDY 506
YD+
Sbjct: 262 KYDF 265
>03_05_0714 -
27076881-27077218,27077332-27077482,27077768-27077903,
27078309-27078457,27079141-27079267,27080033-27080172,
27080264-27080329,27080760-27080901,27081021-27081115,
27081640-27082140
Length = 614
Score = 28.3 bits (60), Expect = 5.3
Identities = 23/79 (29%), Positives = 37/79 (46%)
Frame = -3
Query: 391 LSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKEFKLMHSSNRDKSVRAKR 212
L CA+ L S N L SDS DS+L +++ + SSN D+ ++A
Sbjct: 384 LVDCAIGLLLNELEKSMDGNNLDRSDSLDSILRLIEELSAIDNCSKVMSSN-DQLIKALS 442
Query: 211 SITRFST*FVLIYNFNSNE 155
+I + F + YN+ +E
Sbjct: 443 NIVKLPDKFEIRYNYVPDE 461
>02_05_0642 +
30576158-30576289,30576436-30576503,30577167-30577487,
30578318-30579146
Length = 449
Score = 28.3 bits (60), Expect = 5.3
Identities = 10/22 (45%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
Frame = -1
Query: 327 CSRLIPPIRC-SALNWATPRLR 265
CS +PP+RC L W+ PR++
Sbjct: 23 CSSRLPPLRCFVGLRWSAPRIQ 44
>01_04_0010 - 15058175-15058195,15058320-15058430,15059031-15059246,
15059327-15059505,15059655-15059820,15059914-15059972,
15060065-15060107,15060285-15060354,15060458-15060547,
15060621-15060742,15060777-15060808,15060876-15061064,
15061148-15061241,15061325-15061412,15061498-15061718,
15061924-15061997,15062081-15062363,15062455-15062589,
15062721-15062942,15063029-15063208,15063305-15063402,
15063522-15063634,15064156-15064259,15064400-15064522,
15064857-15065192
Length = 1122
Score = 28.3 bits (60), Expect = 5.3
Identities = 20/84 (23%), Positives = 35/84 (41%)
Frame = +3
Query: 219 ARTDLSLLDECINLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKL 398
+RT L C L L E E ++ ++KR+ + + + LR++ G+
Sbjct: 1040 SRTTQELARRCDTLIRLVEKENQEYDEQER-QARKDKRMAKNMTPTKRSALRVSEGETTP 1098
Query: 399 SQMYIAEKPLSIDDIVKEGSNKVG 470
S + + +DD V G K G
Sbjct: 1099 SNSFKRRRQSLMDDYVGSGRRKRG 1122
>08_02_1525 + 27661094-27661801
Length = 235
Score = 27.9 bits (59), Expect = 7.0
Identities = 21/104 (20%), Positives = 45/104 (43%), Gaps = 2/104 (1%)
Frame = +3
Query: 195 ENRVIDRFARTDLSLLDECINLNSL-TEASPSLGQSSESVESDENKRLNVKLNN-ARVAN 368
+ +++DR L LLD C +N + TE + S+ +N + K+ + R+
Sbjct: 69 QRKLLDREMECSLELLDLCNGMNEVFTELKAIIQDLQVSLRKGDNAAVQTKIQSYIRLVK 128
Query: 369 LRIAHGDNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVY 500
H + ++ ++ I ++ E + T S+F T++
Sbjct: 129 KAKKHSKKTVKKVVSDKEECKIVKLLSEA--REITTSLFESTIH 170
>04_03_0457 +
16113087-16113249,16113468-16113498,16114138-16114271,
16114370-16114518,16114974-16115039,16115159-16115206,
16115293-16115496,16115614-16115637
Length = 272
Score = 27.9 bits (59), Expect = 7.0
Identities = 23/84 (27%), Positives = 43/84 (51%), Gaps = 4/84 (4%)
Frame = +3
Query: 252 INLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLS 431
+N ++ +AS + G+ +E ESD++ ++NV+ N + G KL ++ K L
Sbjct: 81 VNEDTDDDASMNAGEGNE--ESDDDVKINVRDENGTIE----TRGKTKLKDIWNLPKGLR 134
Query: 432 I----DDIVKEGSNKVGTNSIFLG 491
I +D+ + ++ G S FLG
Sbjct: 135 IVVQCNDLNQAVGDEAGILSKFLG 158
>10_08_1063 -
22628642-22628716,22628806-22629012,22629325-22629433,
22629547-22629657,22630466-22630513,22630636-22630713,
22632151-22632254,22632360-22632470,22632555-22632791
Length = 359
Score = 27.5 bits (58), Expect = 9.2
Identities = 16/61 (26%), Positives = 28/61 (45%)
Frame = +3
Query: 255 NLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSI 434
N+ L + SP+ S+ +E D KR+ L I +G + + +E+P S+
Sbjct: 158 NIVHLPQKSPAFDLLSKMLEYDPRKRITAAQALEHEIRLVILNGGSMIYYSNPSEQPFSV 217
Query: 435 D 437
D
Sbjct: 218 D 218
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,403,575
Number of Sequences: 37544
Number of extensions: 320072
Number of successful extensions: 721
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 710
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 721
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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