Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120871.seq
         (627 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)               30   1.8  
SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   3.1  
SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.1  
SB_35928| Best HMM Match : Transposase_9 (HMM E-Value=3.6)             29   4.1  
SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)              29   4.1  
SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)                  27   9.4  

>SB_46059| Best HMM Match : Astacin (HMM E-Value=2.8e-17)
          Length = 1775

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 13/41 (31%), Positives = 23/41 (56%)
 Frame = +3

Query: 387  DNKLSQMYIAEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYG 509
            + +L + +I  K L+++ I K+  N  GT+ +   T  DYG
Sbjct: 1375 ERRLGKPHIGRKTLAVNKIDKDDDNDDGTDEVVKQTFDDYG 1415


>SB_57443| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1007

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 20/98 (20%), Positives = 43/98 (43%)
 Frame = +3

Query: 234 SLLDECINLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYI 413
           SL  + ++ ++L++    L  + +    ++NK   +K+ +    ++R  H    L  +  
Sbjct: 612 SLSSDSLDQSALSQEPQVLSTNVKINNKNKNKLTKLKVLSLNCNSIRSQHKSGLLKALVA 671

Query: 414 AEKPLSIDDIVKEGSNKVGTNSIFLGTVYDYGLNRQTR 527
           +EKP  I     +    +G   +F     DY + R+ R
Sbjct: 672 SEKPHIISGCESKLDPSIGNGEVFSN---DYEIFRRDR 706


>SB_20195| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1351

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/57 (31%), Positives = 29/57 (50%)
 Frame = +3

Query: 291  GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 461
            G  SE++    +K ++   +NA+   L  AHG   LS+  + E  L+  D V  GS+
Sbjct: 833  GIQSENMRKLRSKAVDKATSNAKENALNAAHGAKALSEELLFEITLATVDQVVVGSD 889


>SB_35928| Best HMM Match : Transposase_9 (HMM E-Value=3.6)
          Length = 198

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 17/65 (26%), Positives = 36/65 (55%)
 Frame = +3

Query: 225 TDLSLLDECINLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQ 404
           +D S  +  +NL   +E+  SL ++SESV +   +R + ++ N   + +R  +  ++L +
Sbjct: 109 SDSSTSESMVNLREASESMVSLRRASESVVN--LRRASERIVNLMSSRIRTLNRRSRLFK 166

Query: 405 MYIAE 419
           +Y  E
Sbjct: 167 LYYTE 171


>SB_28153| Best HMM Match : Sec23_trunk (HMM E-Value=0.59)
          Length = 246

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 291 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 461
           G  SE++    +K  +    NA+   L  AHG   LS+  + E  L+  D+V  GS+
Sbjct: 125 GIQSENMRKLRSKAGDKATGNAKENALNAAHGAKALSEALLFEITLATVDLVVVGSD 181


>SB_39566| Best HMM Match : Pyocin_S (HMM E-Value=3.3)
          Length = 736

 Score = 27.5 bits (58), Expect = 9.4
 Identities = 18/57 (31%), Positives = 28/57 (49%)
 Frame = +3

Query: 291 GQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKPLSIDDIVKEGSN 461
           G  SE++    +K  +   +NA+   L  AHG   LS+  + E  L+  D V  GS+
Sbjct: 457 GVQSENMRKLRSKAGDKATSNAKENALNTAHGAKALSEALLFEITLATVDQVVVGSD 513


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,189,859
Number of Sequences: 59808
Number of extensions: 383158
Number of successful extensions: 801
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 770
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 801
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)