Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120871.seq
         (627 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical ...    33   0.17 
Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical pr...    29   2.1  
AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical ...    29   2.7  
AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical ...    29   2.7  
U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna...    29   3.6  
U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical pr...    28   4.8  
Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical p...    28   6.3  
AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical...    28   6.3  

>AF036700-2|AAB88365.1|  550|Caenorhabditis elegans Hypothetical
           protein M04G7.2 protein.
          Length = 550

 Score = 33.1 bits (72), Expect = 0.17
 Identities = 24/86 (27%), Positives = 48/86 (55%), Gaps = 1/86 (1%)
 Frame = +3

Query: 267 LTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMY-IAEKPLSIDDI 443
           LT  SPS  ++S+S+E + ++  N  ++ A     R A+   KL + + ++ + +++DD 
Sbjct: 209 LTADSPSSRRTSKSLEENSSETTNDSISLADDEETREAY--RKLFKDFAMSSQKMTLDDF 266

Query: 444 VKEGSNKVGTNSIFLGTVYDYGLNRQ 521
            +E SN  G     L TV+++ +N +
Sbjct: 267 KQEFSNLPGDPPSDLCTVFNHPVNNK 292


>Z75530-8|CAA99792.2|  405|Caenorhabditis elegans Hypothetical
           protein C47E8.3 protein.
          Length = 405

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 19/68 (27%), Positives = 36/68 (52%), Gaps = 1/68 (1%)
 Frame = -3

Query: 499 YTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLN-LLSPCAMRKLATRALLSFTFNRLF 323
           Y + + + +  T+ E ++  SS++ GF  +Y +LN ++S   +     R  + F  NRL 
Sbjct: 275 YLLSQSLQVFLTVWE-TINRSSLEDGFPTMYSYLNDIVSIFTLLASCLRFPIYFCCNRLI 333

Query: 322 SSDSTDSL 299
            + S D+L
Sbjct: 334 HTASVDTL 341


>AF038614-1|AAB92058.2| 1228|Caenorhabditis elegans Hypothetical
           protein F15E6.6 protein.
          Length = 1228

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 31/111 (27%), Positives = 53/111 (47%)
 Frame = -3

Query: 595 DLNSLISKFAVPRVHGHITRCAGRVWRFNP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFS 416
           ++++ I KF+ P++    T   G V      S +V   +LL+  +L   LT+ + DSG  
Sbjct: 318 EVDAFIKKFSSPQIANFATWTGGIVSGAKS-SISVS-DLLLLFNVLNAKLTLLT-DSGDL 374

Query: 415 AIYIWLNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKE 263
                +N+      +  AT  ++    N +FSS  T  L C KLG+ S ++
Sbjct: 375 T---QVNIEEFVEKKLFATNTIV----NTVFSSSITGQLFCLKLGETSEQD 418


>AC024798-2|AAK29923.1|  352|Caenorhabditis elegans Hypothetical
           protein Y48G9A.9a protein.
          Length = 352

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
 Frame = +3

Query: 255 NLNSLTEASPSLGQSSESVESDENKRLNVK-LNNARVANLRIAHGDNKLSQMY 410
           N N++ E  P+  QSS   E+D++ R  V+ LNN  +A  ++  G   L++ Y
Sbjct: 17  NNNNVNEKRPASAQSSNGTETDDHHRKYVETLNNFIIATEKL--GIEGLAKQY 67


>U23169-7|AAL02449.1|  512|Caenorhabditis elegans Arginyl aa-trna
           synthetase protein2 protein.
          Length = 512

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/41 (26%), Positives = 21/41 (51%)
 Frame = +2

Query: 32  EQFITAIFEIFTLSSKIVVAVPVNWENDNLSVLLKHLHNLN 154
           E+F   ++E F    K V     NW+ND   +L + + +++
Sbjct: 131 EEFRAKVYETFVAMEKAVTGEQENWKNDEHMMLWQQIKDIS 171


>U23519-9|ABS19470.1|  203|Caenorhabditis elegans Hypothetical
           protein F26G1.11 protein.
          Length = 203

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/28 (35%), Positives = 19/28 (67%)
 Frame = +3

Query: 243 DECINLNSLTEASPSLGQSSESVESDEN 326
           D+C+N+N + E   + G+S E ++S+ N
Sbjct: 76  DDCLNINIIIEHGCTKGRSEEEIQSNIN 103


>Z82051-10|CAB04822.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 520 WRFNP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSF 341
           WR    S+++ + M+  P+L      ++S+      +    NL  P  +RKL+ R ++S 
Sbjct: 399 WRTQK-SFSIAKLMIWFPSLAVSEWKLTSLPGILDEMTAAFNLFKPGNLRKLSLRRVVSV 457

Query: 340 TFNRL 326
               L
Sbjct: 458 NIKSL 462


>AL021175-11|CAA15973.2|  577|Caenorhabditis elegans Hypothetical
           protein T23D5.2 protein.
          Length = 577

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 16/65 (24%), Positives = 30/65 (46%)
 Frame = -3

Query: 520 WRFNP*SYTVPRKMLLVPTLLEPSLTMSSIDSGFSAIYIWLNLLSPCAMRKLATRALLSF 341
           WR    S+++ + M+  P+L      ++S+      +    NL  P  +RKL+ R ++S 
Sbjct: 399 WRTQK-SFSIAKLMIWFPSLAVSEWKLTSLPGILDEMTAAFNLFKPGNLRKLSLRRVVSV 457

Query: 340 TFNRL 326
               L
Sbjct: 458 NIKSL 462


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,221,805
Number of Sequences: 27780
Number of extensions: 284627
Number of successful extensions: 705
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 696
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 705
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)