Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120871.seq
         (627 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containi...    34   0.089
At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containi...    32   0.36 
At2g36810.1 68415.m04514 expressed protein                             31   0.63 
At2g28360.1 68415.m03447 SIT4 phosphatase-associated family prot...    30   1.1  
At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containi...    29   1.9  
At3g56870.1 68416.m06326 hypothetical protein                          28   4.4  
At5g23890.1 68418.m02806 expressed protein weak similarity to SP...    28   5.8  
At3g11950.1 68416.m01473 UbiA prenyltransferase family protein c...    27   7.7  

>At5g37130.1 68418.m04457 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 856

 Score = 33.9 bits (74), Expect = 0.089
 Identities = 27/78 (34%), Positives = 41/78 (52%), Gaps = 4/78 (5%)
 Frame = -3

Query: 421 FSAIYIWLNLL-SPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKEF---KL 254
           F ++ +W NL+   C+M K +  A +     RL    +   L C  LGD ++ +    K 
Sbjct: 480 FESLELWDNLIYCYCSMGKKS--AAVDLINARLLERPNDPRLWC-SLGDVTISDSCYEKA 536

Query: 253 MHSSNRDKSVRAKRSITR 200
           +  SN DKSVRAKR++ R
Sbjct: 537 LEVSN-DKSVRAKRALAR 553


>At5g17270.1 68418.m02023 tetratricopeptide repeat (TPR)-containing
           protein contains Pfam profile PF00515 TPR Domain
          Length = 899

 Score = 31.9 bits (69), Expect = 0.36
 Identities = 26/78 (33%), Positives = 40/78 (51%), Gaps = 4/78 (5%)
 Frame = -3

Query: 421 FSAIYIWLNLL-SPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGDASVKEF---KL 254
           F ++ +W NL+   C + K +  A +     RL    +   L C  LGD ++ +    K 
Sbjct: 509 FESLELWDNLIYCYCLLGKKS--AAVDLINARLLERPNDPRLWC-SLGDVTINDSCYEKA 565

Query: 253 MHSSNRDKSVRAKRSITR 200
           +  SN DKSVRAKR++ R
Sbjct: 566 LEVSN-DKSVRAKRALAR 582


>At2g36810.1 68415.m04514 expressed protein 
          Length = 1071

 Score = 31.1 bits (67), Expect = 0.63
 Identities = 15/35 (42%), Positives = 23/35 (65%)
 Frame = +3

Query: 135 NICTT*ISLELKL*IKTNHVENRVIDRFARTDLSL 239
           N CTT +S+E KL I+T +   +++D+F    LSL
Sbjct: 616 NACTTLVSVEPKLTIETRNRVMKILDQFFSISLSL 650


>At2g28360.1 68415.m03447 SIT4 phosphatase-associated family protein
           contains Pfam profile: PF04499 SIT4
           phosphatase-associated protein
          Length = 826

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/55 (32%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
 Frame = +3

Query: 210 DRFARTDLSLLDECINLNSLTEASPSLGQSSE-SVESDENKRLNVKLNNARVANL 371
           DRF+      + E +N+N  T A+ S     E  VE +E+  L  K  N   +NL
Sbjct: 628 DRFSNPTSDTMIEDVNMNETTNANDSSSSDDELLVEEEEDDDLTEKSKNISPSNL 682


>At2g41080.1 68415.m05074 pentatricopeptide (PPR) repeat-containing
           protein contains INTERPRO:IPR002885 PPR repeats
          Length = 565

 Score = 29.5 bits (63), Expect = 1.9
 Identities = 25/77 (32%), Positives = 35/77 (45%), Gaps = 5/77 (6%)
 Frame = -3

Query: 412 IYIWLNLLSPCAMRKLATRALLSFTFNRLFSSDSTDSLLCPKLGD--ASVKEFK---LMH 248
           I IW  LLS C + K A  A     F  +   D  DS     L +  AS K ++    + 
Sbjct: 362 IVIWKTLLSACNIHKNAEMA--QRVFKEILQIDPNDSACYVLLANVHASAKRWRDVSEVR 419

Query: 247 SSNRDKSVRAKRSITRF 197
            S RDK+V+ +  I+ F
Sbjct: 420 KSMRDKNVKKEAGISWF 436


>At3g56870.1 68416.m06326 hypothetical protein 
          Length = 670

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 21/62 (33%), Positives = 28/62 (45%)
 Frame = +3

Query: 225 TDLSLLDECINLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQ 404
           TD+  L  C N  SL    P    S+ S E D    L  +L  +  +      GD+KLSQ
Sbjct: 338 TDILQLTNCCN--SLDNLQPVPEDSTSSKEEDH---LTERLQQSLYSKHEDEAGDHKLSQ 392

Query: 405 MY 410
           +Y
Sbjct: 393 LY 394


>At5g23890.1 68418.m02806 expressed protein weak similarity to
           SP|P12957 Caldesmon (CDM) {Gallus gallus}
          Length = 946

 Score = 27.9 bits (59), Expect = 5.8
 Identities = 15/44 (34%), Positives = 24/44 (54%)
 Frame = +3

Query: 258 LNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGD 389
           ++SLT    S+ QSS+ + SDE K  N + +N +  +  I   D
Sbjct: 125 MHSLTSQQESMIQSSDEISSDEIKVANSEESNLKDEDKSIESND 168


>At3g11950.1 68416.m01473 UbiA prenyltransferase family protein
           contains Pfam profile PF01040: UbiA prenyltransferase
           family
          Length = 954

 Score = 27.5 bits (58), Expect = 7.7
 Identities = 20/72 (27%), Positives = 33/72 (45%)
 Frame = +3

Query: 246 ECINLNSLTEASPSLGQSSESVESDENKRLNVKLNNARVANLRIAHGDNKLSQMYIAEKP 425
           E  NL ++T    +     + + S E     VK    +V+   IA   N+  ++  A+K 
Sbjct: 365 ETSNLKAVTLEQTAREAPEDKLVSKEVDAAMVKEAAKKVSEAEIADNVNEEGELK-AQKL 423

Query: 426 LSIDDIVKEGSN 461
           L I + +KEG N
Sbjct: 424 LEIGEFIKEGDN 435


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,351,677
Number of Sequences: 28952
Number of extensions: 262839
Number of successful extensions: 691
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 682
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 691
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)