Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120870.seq
         (616 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)                  125   3e-29
SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)                 33   0.18 
SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)                      27   9.1  

>SB_5032| Best HMM Match : COX1 (HMM E-Value=8.3e-10)
          Length = 229

 Score =  125 bits (301), Expect = 3e-29
 Identities = 56/82 (68%), Positives = 71/82 (86%)
 Frame = +2

Query: 257 IDIDTRAYFTSATIIIAVPTGIKIFR*LATIHGTQINYNPNIL*RLGFVFLFTVGGLTGV 436
           +++DTRAYFT+AT+IIAVPTGIK+F  LAT++G  I  +  +L  +GFVFLFT+GGLTGV
Sbjct: 1   MNVDTRAYFTAATMIIAVPTGIKVFSWLATLYGGAIRLDTPMLWAIGFVFLFTIGGLTGV 60

Query: 437 ILANSSIDITLHDTYYVVAHFH 502
           ILANSS+D+ +HDTYYVVAHFH
Sbjct: 61  ILANSSLDVVMHDTYYVVAHFH 82


>SB_38952| Best HMM Match : 7tm_2 (HMM E-Value=1.7e-21)
          Length = 959

 Score = 33.1 bits (72), Expect = 0.18
 Identities = 42/151 (27%), Positives = 61/151 (40%), Gaps = 3/151 (1%)
 Frame = +2

Query: 56   FISTFILIFWTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVIRIHCLS 235
            FI ++  +  ++ SL+ N TR  Y F  Y   + K         +  YT     RI    
Sbjct: 600  FIESYEYVILSNKSLFHNATRRVYQFDQYTVNENKTATICSNFTDKSYTKKQ--RIEIGG 657

Query: 236  SSYIHCSIDIDTR-AYFTSATIIIAVPTGIKIFR*LATIHGTQ-INYNPNIL*RLGFVFL 409
            SS +  ++ + T      S   ++ V     +F  L T  G   +N + +IL      FL
Sbjct: 658  SSNVELALTVLTYVGLILSVACLLVVVVTYSLFSELRTAPGVNLLNLSISILLA---QFL 714

Query: 410  FTVG-GLTGVILANSSIDITLHDTYYVVAHF 499
            F VG G TG       I I LH  Y  +A F
Sbjct: 715  FLVGSGQTGSKAGCVFIAIVLH--YAFLASF 743


>SB_24421| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 382

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 236 SSYIHCSIDIDTRAYFTSATIIIAVPTG 319
           SS  HC+ + D++ Y   AT I  +P+G
Sbjct: 23  SSGTHCAFECDSQHYLKGATTIACLPSG 50


>SB_8329| Best HMM Match : FTR1 (HMM E-Value=0.87)
          Length = 371

 Score = 27.5 bits (58), Expect = 9.1
 Identities = 14/45 (31%), Positives = 21/45 (46%)
 Frame = +2

Query: 83  WTS*SLYFNFTRIWYNFSYYFTRKRKKRNFWLFRNNLCYTSNWVI 217
           W++  LY   + +W N   Y      + N  L+ N+ C  SN VI
Sbjct: 326 WSNAVLYTYHSCLWSNAVLYTNHSCLRSNAVLYTNHSCLRSNAVI 370


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,240,143
Number of Sequences: 59808
Number of extensions: 190239
Number of successful extensions: 561
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 556
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 561
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1512078125
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)