Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120869.seq
(628 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||... 28 1.3
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p... 27 1.7
SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces ... 27 2.2
SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual 27 2.2
SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces pom... 26 3.9
SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr ... 26 3.9
SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein Mud1|Schizosacch... 26 3.9
SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyce... 26 3.9
SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces pombe... 25 6.8
SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|... 25 9.0
>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 269
Score = 27.9 bits (59), Expect = 1.3
Identities = 22/67 (32%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 370 TTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNK-NLNDQDELNIYLEFNRRMQSVKNIN 546
+++E ++ K IED N K +E IRK S + L L+ L F S IN
Sbjct: 67 SSLEENKLTKLKAPIEDMENTKKELEEIRKQSTETELRYLKSLSNTLSFGTLSLS-NEIN 125
Query: 547 KVKTTAT 567
KV +A+
Sbjct: 126 KVGPSAS 132
>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 2280
Score = 27.5 bits (58), Expect = 1.7
Identities = 16/36 (44%), Positives = 18/36 (50%)
Frame = +1
Query: 256 GTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTM 363
GT I E N L ID PLSR Y+NA T+
Sbjct: 1198 GTMIAAETFDELENNLALAIDRLPLSRNYFNAGLTL 1233
>SPCC1840.07c |||phosphoprotein phosphatase |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 332
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/45 (37%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
Frame = -2
Query: 417 LNVE-LAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL 286
LNV L +GH FHG V GRI++ T Y E+ V ++
Sbjct: 268 LNVNRLVMGHTPQFHGIVSRCEGRILLIDTGLCSAYAGERAVLRI 312
>SPAC1F3.05 |||adaptin |Schizosaccharomyces pombe|chr 1|||Manual
Length = 510
Score = 27.1 bits (57), Expect = 2.2
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 2/56 (3%)
Frame = +1
Query: 286 EFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFN--IEDYNNIFKVME 447
EFLN + +P+SRM N + +E + CK N ED++ I + E
Sbjct: 87 EFLNGFVSRFPNHPISRM--NKIQSKMLEMLEEWNYMLCKNNRHREDFSRIHDIRE 140
>SPBP4G3.02 |pho1||acid phosphatase Pho1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 453
Score = 26.2 bits (55), Expect = 3.9
Identities = 17/57 (29%), Positives = 28/57 (49%)
Frame = +1
Query: 259 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVSNCKFNIEDYNN 429
TE+ C+DS++ R L + + +PLS + +NT E YA N + +N
Sbjct: 378 TELFQCEDSKYYVRHLVNEEVFPLSDCGFGPSNTS-DGMCELYAYLNSPVRVNGTSN 433
>SPBC21H7.03c |||acid phosphatase |Schizosaccharomyces pombe|chr
2|||Manual
Length = 463
Score = 26.2 bits (55), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +1
Query: 259 TEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAANT 360
TE+ FC DS++ R L + YPL Y + T
Sbjct: 388 TELFFCSDSKYYVRHLVNQQVYPLIDCGYGPSGT 421
>SPAC56F8.08 |mud1|ucp1, ddi1|UBA domain protein
Mud1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 332
Score = 26.2 bits (55), Expect = 3.9
Identities = 11/23 (47%), Positives = 17/23 (73%)
Frame = +1
Query: 253 HGTEIPFCDDSEFLNRLLKHIDP 321
HG EIPF +SE + +LL +++P
Sbjct: 219 HGKEIPFLGESE-IPKLLANVEP 240
>SPAC6F6.07c |rps13||40S ribosomal protein S13|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 151
Score = 26.2 bits (55), Expect = 3.9
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 415 EDYNNIFKVMENIRKHSNKNLNDQD 489
ED N+ K ++RKH +N D+D
Sbjct: 86 EDLYNLIKKAVSVRKHLERNRKDKD 110
>SPAC19B12.07c |||human ZNF277P homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 319
Score = 25.4 bits (53), Expect = 6.8
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 241 TIHQHGTEIPFCDDSEFLNRLLKHI 315
+ H HG I D+ ++NRLL+ I
Sbjct: 115 SFHVHGLNIGLADNIVYINRLLEKI 139
>SPBP26C9.03c |||iron ion transporter |Schizosaccharomyces pombe|chr
2|||Manual
Length = 584
Score = 25.0 bits (52), Expect = 9.0
Identities = 14/45 (31%), Positives = 21/45 (46%)
Frame = +1
Query: 349 AANTMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLND 483
AA T + ++YA S D KV + +KH +KN+ D
Sbjct: 93 AAPTQLVRSCDDYANSASTLVTNDDGTKTKVDSDEKKHKHKNVRD 137
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,527,663
Number of Sequences: 5004
Number of extensions: 49726
Number of successful extensions: 208
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 200
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 208
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 277683324
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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