Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120869.seq
         (628 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_03_1168 - 28114656-28114721,28114800-28114889,28115139-281168...    29   2.3  
07_01_0361 - 2655442-2655706,2656339-2656466,2658428-2658438,265...    27   9.2  
06_03_1453 - 30258527-30258685,30259823-30260071,30260383-302604...    27   9.2  

>06_03_1168 - 28114656-28114721,28114800-28114889,28115139-28116877,
            28117146-28117227,28117794-28117865,28119412-28119453,
            28120352-28120401,28121253-28121372,28121635-28121707,
            28121828-28122100,28122413-28122517,28122730-28122859,
            28123106-28123356,28123787-28123993,28124185-28124455,
            28124808-28124914
          Length = 1225

 Score = 29.5 bits (63), Expect = 2.3
 Identities = 22/82 (26%), Positives = 36/82 (43%), Gaps = 3/82 (3%)
 Frame = +1

Query: 85   YAVVVCTLF---QQSDYEIRENSAVTKRGFTARQTHHS*RIVDRARREDTNVAAATIHQH 255
            YAV+ CTL      S+     N  + + G+ +  +        R R     V ++ +  H
Sbjct: 1043 YAVLECTLKILRHLSEVSEEYNRMMGRAGYLSALSSLLGAKSCRVREMAAQVLSSLLLLH 1102

Query: 256  GTEIPFCDDSEFLNRLLKHIDP 321
               + F  D + LNRLL+ +DP
Sbjct: 1103 PNRVIFIQDGDNLNRLLQLLDP 1124


>07_01_0361 -
           2655442-2655706,2656339-2656466,2658428-2658438,
           2659586-2659704,2659746-2659906,2660115-2660132
          Length = 233

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 16/47 (34%), Positives = 25/47 (53%)
 Frame = +3

Query: 204 SSAARRYKCCSRNNTSTRYRNSVLRRFRVFEQAAQTHRSVPAQSDVL 344
           SSA +   C S +    R+ N++LRRFR  ++  QT R    +  +L
Sbjct: 111 SSAQKNAYCSSTSPQQRRHANTLLRRFR--DKIIQTWRHEETREMIL 155


>06_03_1453 -
           30258527-30258685,30259823-30260071,30260383-30260477,
           30260543-30260657
          Length = 205

 Score = 27.5 bits (58), Expect = 9.2
 Identities = 9/12 (75%), Positives = 10/12 (83%)
 Frame = -2

Query: 261 GTVLMYCCGCNI 226
           GTV + CCGCNI
Sbjct: 148 GTVFVQCCGCNI 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,195,310
Number of Sequences: 37544
Number of extensions: 311697
Number of successful extensions: 895
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 878
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 895
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1525730988
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)