Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120869.seq
(628 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_11394| Best HMM Match : GntR (HMM E-Value=7.9) 33 0.14
SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.) 31 0.58
SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4) 30 1.3
SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.) 30 1.3
SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.3
SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3) 29 2.3
SB_24652| Best HMM Match : Kinesin (HMM E-Value=3) 28 5.4
SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14) 28 5.4
SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.4
SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25) 28 7.1
SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.4
SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37) 27 9.4
SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6) 27 9.4
>SB_11394| Best HMM Match : GntR (HMM E-Value=7.9)
Length = 451
Score = 33.5 bits (73), Expect = 0.14
Identities = 30/103 (29%), Positives = 43/103 (41%), Gaps = 3/103 (2%)
Frame = -2
Query: 429 VIVILNVELAIGHGIVFHGRVKHGIGRIVIHPTERVRIYVFEQPVQKL*I---VAKRNFG 259
V+ + + L + H ++ RV H + R+ H RV V L I V +
Sbjct: 61 VLRVAHAVLRVAHAVL---RVAHAVLRVA-HAVLRVAHAVLRVAHTVLRIAHAVLRDAHV 116
Query: 258 TVLMYCCGCNICIFSPRSINNSSRVVRLSRCEATFCNSTIFAY 130
+LM CC C I S R + S RVV S C C+ + Y
Sbjct: 117 VLLMPCCSCRIACCSCRVVCYSCRVVFCS-CRVACCSCRVVCY 158
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = -2
Query: 243 CCGCNICIFSPRSINNSSRVVRLSRCEATFCNSTIFAY 130
CC C + S R + S RVV S C C+ + Y
Sbjct: 164 CCSCRVACCSCRVVCYSCRVVCYS-CRVACCSCRVVCY 200
>SB_39421| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1810
Score = 31.5 bits (68), Expect = 0.58
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 1/68 (1%)
Frame = +1
Query: 31 AISVGDAFDHSRLDDRRYYAVVVCTLFQ-QSDYEIRENSAVTKRGFTARQTHHS*RIVDR 207
+I D +H L + ++ + + F Q + R ++VT +G A HHS R R
Sbjct: 1626 SIHTSDISNHGSLLSQSAHSASMSSRFSDQGEMLSRSGASVTMKGLEAENIHHSPREEAR 1685
Query: 208 ARREDTNV 231
RED +
Sbjct: 1686 YPREDAQI 1693
>SB_13898| Best HMM Match : DUF987 (HMM E-Value=3.4)
Length = 421
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Frame = -1
Query: 136 RVFHNRTVETTCKRRPHNID-GRQVDCGRRHLQQRSHG 26
RV+ T+++T RPH +D R + QQR HG
Sbjct: 347 RVYQQETIDSTVNTRPHGMDKSLPARDNRLYRQQRPHG 384
>SB_14816| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 3760
Score = 30.3 bits (65), Expect = 1.3
Identities = 12/41 (29%), Positives = 26/41 (63%), Gaps = 1/41 (2%)
Frame = +1
Query: 415 EDYNNIFKVMENIRKHSNKNLNDQDELNIYL-EFNRRMQSV 534
E + N+ K + N+++ + KN+ ++D+L +L E N+ M +
Sbjct: 2005 EKFENLEKQVNNVKEEAEKNVQEKDQLTGFLHEVNQEMDVI 2045
>SB_30168| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 6863
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/38 (28%), Positives = 22/38 (57%)
Frame = +1
Query: 412 IEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFNRRM 525
+++YNN K ++N+R N +N+ +N + E R+
Sbjct: 5238 LKEYNNTMKELDNVRHQLNARVNELQAINEFEEDYARL 5275
>SB_43734| Best HMM Match : bZIP_1 (HMM E-Value=3.3)
Length = 218
Score = 29.5 bits (63), Expect = 2.3
Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Frame = +1
Query: 286 EFLNRLLKHIDPYPLSRMYY--NAANTMFYTTMENYAVSNCKFNI 414
E L+ L KH+ L+ + N+ T FYT + NY NC + +
Sbjct: 117 EELSNLRKHLVSIKLTEETFKENSETTKFYTGLPNYNTFNCVYKL 161
>SB_24652| Best HMM Match : Kinesin (HMM E-Value=3)
Length = 351
Score = 28.3 bits (60), Expect = 5.4
Identities = 24/109 (22%), Positives = 43/109 (39%), Gaps = 7/109 (6%)
Frame = +1
Query: 301 LLKHIDPYPLSRMYYNAANTMFYT-------TMENYAVSNCKFNIEDYNNIFKVMENIRK 459
++ H+ P SRM+ + NT+ Y T N ++I Y NI +
Sbjct: 56 MIAHVSP--ASRMFEESRNTLLYADRAKSIKTKVKRNQFNVSYHIAQYTNIIADLRKEIF 113
Query: 460 HSNKNLNDQDELNIYLEFNRRMQSVKNINKVKTTAT*ITQFKHGLFVAV 606
+ DQD +N E + ++ ++T I KHG++ +
Sbjct: 114 RLKTKIADQD-INELTEGKAASKRSFSVMSIRTRLKEIIPSKHGVYCRI 161
>SB_17535| Best HMM Match : C2 (HMM E-Value=2.7e-14)
Length = 553
Score = 28.3 bits (60), Expect = 5.4
Identities = 10/15 (66%), Positives = 12/15 (80%)
Frame = -2
Query: 393 HGIVFHGRVKHGIGR 349
HG+VFHG +HG GR
Sbjct: 250 HGVVFHGARQHGRGR 264
>SB_28739| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 270
Score = 28.3 bits (60), Expect = 5.4
Identities = 15/53 (28%), Positives = 22/53 (41%)
Frame = +1
Query: 103 TLFQQSDYEIRENSAVTKRGFTARQTHHS*RIVDRARREDTNVAAATIHQHGT 261
T+ + S IR+N +T R TH + D R + T H+H T
Sbjct: 122 TVHEHSTITIRQNCTITVHEHGTRTTHDKRPLYDHGTRTRHHHGTRTRHEHCT 174
>SB_13365| Best HMM Match : PKD_channel (HMM E-Value=1.4e-25)
Length = 2146
Score = 27.9 bits (59), Expect = 7.1
Identities = 21/58 (36%), Positives = 31/58 (53%)
Frame = -2
Query: 207 SINNSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRANDDRIISTVVKSTVVEGISNRD 34
S++ S+ VV L AT C +FA + +GL+ R D R VV +T+ SN+D
Sbjct: 1197 SLDQSNNVVVL----ATVC--LMFALYALGLVFARRADQRDKQKVVNTTIRLNESNQD 1248
>SB_12549| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 565
Score = 27.5 bits (58), Expect = 9.4
Identities = 10/44 (22%), Positives = 20/44 (45%)
Frame = +1
Query: 265 IPFCDDSEFLNRLLKHIDPYPLSRMYYNAANTMFYTTMENYAVS 396
+P+C F+ R K PY L + + + M++Y ++
Sbjct: 223 VPYCSGDVFVGRKTKETHPYGLQMLGHFIVKAVVQQLMDDYKIN 266
>SB_3410| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1256
Score = 27.5 bits (58), Expect = 9.4
Identities = 18/56 (32%), Positives = 26/56 (46%)
Frame = +1
Query: 16 AVGRRAISVGDAFDHSRLDDRRYYAVVVCTLFQQSDYEIRENSAVTKRGFTARQTH 183
A G ++ + DA + RLD R + + + F S Y+I N KR R TH
Sbjct: 163 AKGIKSDGLRDAIEDYRLDRRGWLKRGLHSSFFLSHYKITNNGEGKKRAAGGRVTH 218
>SB_5797| Best HMM Match : PH (HMM E-Value=3.7e-37)
Length = 1481
Score = 27.5 bits (58), Expect = 9.4
Identities = 15/44 (34%), Positives = 23/44 (52%)
Frame = +1
Query: 343 YNAANTMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKN 474
Y++ N + + +Y +N +NI YNN N K+SNKN
Sbjct: 288 YSSYNNRY--NLNSYNNNNNTYNINTYNNNNTYNVNSYKNSNKN 329
>SB_4814| Best HMM Match : NTP_transf_2 (HMM E-Value=0.6)
Length = 426
Score = 27.5 bits (58), Expect = 9.4
Identities = 14/46 (30%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 436 KVMENIRKHSNKNLNDQDELNIYLEFNRRM--QSVKNINKVKTTAT 567
+ +E++++H N + L Y EFN RM + I +V AT
Sbjct: 211 RTLEDLKRHGGLNKQQEIGLRYYDEFNERMPREEAGKIGEVVKAAT 256
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,452,929
Number of Sequences: 59808
Number of extensions: 403453
Number of successful extensions: 1300
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 1154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1295
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1560464625
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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