Bombyx BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120869.seq
         (628 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

D43949-1|BAA07893.2|  882|Homo sapiens KIAA0082 protein.               31   3.3  
BC031890-1|AAH31890.1|  835|Homo sapiens KIAA0082 protein.             31   3.3  
AL353597-2|CAI19603.1|  835|Homo sapiens KIAA0082 protein.             31   3.3  
EF011617-1|ABK41107.1|  423|Homo sapiens CDW7/WDR12 protein.           30   7.7  
BC008082-1|AAH08082.1|  423|Homo sapiens WD repeat domain 12 pro...    30   7.7  
AK022782-1|BAB14243.1|  423|Homo sapiens protein ( Homo sapiens ...    30   7.7  
AK022781-1|BAB14242.1|  423|Homo sapiens protein ( Homo sapiens ...    30   7.7  
AK001743-1|BAA91875.1|  423|Homo sapiens protein ( Homo sapiens ...    30   7.7  
AF242546-1|AAF60355.1|  423|Homo sapiens YTM1 protein.                 30   7.7  
AC010900-2|AAY24287.1|  423|Homo sapiens unknown protein.              30   7.7  

>D43949-1|BAA07893.2|  882|Homo sapiens KIAA0082 protein.
          Length = 882

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 252 LMYCCGCNICIFSPRSIN--NSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRANDDRIIS 79
           L+YCC   +C+F P +    NS R V     +    +   + + +   L Q  N D  ++
Sbjct: 466 LLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVN 525

Query: 78  TVVKSTVVEG 49
            VV   V++G
Sbjct: 526 LVVPLEVIKG 535


>BC031890-1|AAH31890.1|  835|Homo sapiens KIAA0082 protein.
          Length = 835

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 252 LMYCCGCNICIFSPRSIN--NSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRANDDRIIS 79
           L+YCC   +C+F P +    NS R V     +    +   + + +   L Q  N D  ++
Sbjct: 419 LLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVN 478

Query: 78  TVVKSTVVEG 49
            VV   V++G
Sbjct: 479 LVVPLEVIKG 488


>AL353597-2|CAI19603.1|  835|Homo sapiens KIAA0082 protein.
          Length = 835

 Score = 31.1 bits (67), Expect = 3.3
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 2/70 (2%)
 Frame = -2

Query: 252 LMYCCGCNICIFSPRSIN--NSSRVVRLSRCEATFCNSTIFAYFIIGLLKQRANDDRIIS 79
           L+YCC   +C+F P +    NS R V     +    +   + + +   L Q  N D  ++
Sbjct: 419 LLYCCFERVCLFKPITSRPANSERYVVCKGLKVGIDDVRDYLFAVNIKLNQLRNTDSDVN 478

Query: 78  TVVKSTVVEG 49
            VV   V++G
Sbjct: 479 LVVPLEVIKG 488


>EF011617-1|ABK41107.1|  423|Homo sapiens CDW7/WDR12 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


>BC008082-1|AAH08082.1|  423|Homo sapiens WD repeat domain 12
           protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


>AK022782-1|BAB14243.1|  423|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12720 fis, clone NT2RP1001302, weakly similar to
           MICROTUBULE-ASSOCIATED PROTEIN YTM1. ).
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


>AK022781-1|BAB14242.1|  423|Homo sapiens protein ( Homo sapiens
           cDNA FLJ12719 fis, clone NT2RP1001294, weakly similar to
           MICROTUBULE-ASSOCIATED PROTEIN YTM1. ).
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


>AK001743-1|BAA91875.1|  423|Homo sapiens protein ( Homo sapiens
           cDNA FLJ10881 fis, clone NT2RP4001927, weakly similar to
           MICROTUBULE-ASSOCIATED PROTEIN YTM1. ).
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


>AF242546-1|AAF60355.1|  423|Homo sapiens YTM1 protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


>AC010900-2|AAY24287.1|  423|Homo sapiens unknown protein.
          Length = 423

 Score = 29.9 bits (64), Expect = 7.7
 Identities = 19/53 (35%), Positives = 30/53 (56%)
 Frame = +1

Query: 358 TMFYTTMENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFN 516
           T FYT  + YAV +  F+I   + I   + NI    NK L D++E + ++EF+
Sbjct: 6   TRFYTDNKKYAVDDVPFSIPAASEIAD-LSNI---INKLLKDKNEFHKHVEFD 54


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 83,864,145
Number of Sequences: 237096
Number of extensions: 1594899
Number of successful extensions: 7988
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7832
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7988
length of database: 76,859,062
effective HSP length: 87
effective length of database: 56,231,710
effective search space used: 6804036910
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)