Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120869.seq
(628 letters)
Database: fruitfly
53,049 sequences; 24,988,368 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA polymerase... 31 1.7
AY118677-1|AAM50537.1| 614|Drosophila melanogaster AT07671p pro... 30 2.9
AE014297-3811|AAF56476.1| 614|Drosophila melanogaster CG5111-PA... 30 2.9
AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-P... 29 5.1
D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase... 28 9.0
BT029104-1|ABJ17037.1| 595|Drosophila melanogaster IP14602p pro... 28 9.0
AY128464-1|AAM75057.1| 659|Drosophila melanogaster RE19005p pro... 28 9.0
AY118949-1|AAM50809.1| 333|Drosophila melanogaster LD32459p pro... 28 9.0
AY070529-1|AAL48000.1| 746|Drosophila melanogaster GM13460p pro... 28 9.0
AY060958-1|AAL28506.1| 568|Drosophila melanogaster GM08907p pro... 28 9.0
AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA... 28 9.0
AE014296-1984|AAN11876.1| 649|Drosophila melanogaster CG6091-PC... 28 9.0
AE014296-1983|AAF50041.1| 649|Drosophila melanogaster CG6091-PA... 28 9.0
AE013599-3100|AAF46652.3| 1634|Drosophila melanogaster CG10543-P... 28 9.0
AE013599-2203|AAF58052.2| 333|Drosophila melanogaster CG8435-PA... 28 9.0
AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymera... 28 9.0
>S48157-1|AAB24152.1| 1490|Drosophila melanogaster DNA
polymerase-primase 180 kdasubunit protein.
Length = 1490
Score = 30.7 bits (66), Expect = 1.7
Identities = 14/31 (45%), Positives = 22/31 (70%)
Frame = +1
Query: 409 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 501
NI DY+ ++K+ NI++ NK L Q+EL+I
Sbjct: 1023 NITDYDQVYKIGHNIKQSVNK-LYKQEELDI 1052
>AY118677-1|AAM50537.1| 614|Drosophila melanogaster AT07671p
protein.
Length = 614
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 391 VSNCKFNIEDYNNIFKVMENIRKHSNKNLN---DQDELNIYLEFNRRMQ 528
+S K IE YN + EN+ +++N LN DQ+E I +E+ R ++
Sbjct: 566 LSEAKSEIESYNAFKRFNENLAENNNHYLNLPLDQEE-QILIEYKRLLE 613
>AE014297-3811|AAF56476.1| 614|Drosophila melanogaster CG5111-PA
protein.
Length = 614
Score = 29.9 bits (64), Expect = 2.9
Identities = 17/49 (34%), Positives = 28/49 (57%), Gaps = 3/49 (6%)
Frame = +1
Query: 391 VSNCKFNIEDYNNIFKVMENIRKHSNKNLN---DQDELNIYLEFNRRMQ 528
+S K IE YN + EN+ +++N LN DQ+E I +E+ R ++
Sbjct: 566 LSEAKSEIESYNAFKRFNENLAENNNHYLNLPLDQEE-QILIEYKRLLE 613
>AE014134-2678|AAF53505.2| 2190|Drosophila melanogaster CG12455-PA,
isoform A protein.
Length = 2190
Score = 29.1 bits (62), Expect = 5.1
Identities = 18/59 (30%), Positives = 32/59 (54%)
Frame = +1
Query: 388 AVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFNRRMQSVKNINKVKTTA 564
A+ N N+++ N+++VMEN+ NKNL EL I L + ++ + +TT+
Sbjct: 1367 AIQNTNQNVDNIANVYEVMENL----NKNLR---ELVILLSDKESFPTTESSSSQQTTS 1418
>D90310-1|BAA14340.1| 1505|Drosophila melanogaster DNA polymerase
alpha protein.
Length = 1505
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 409 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 501
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 1020 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 1049
>BT029104-1|ABJ17037.1| 595|Drosophila melanogaster IP14602p
protein.
Length = 595
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 140 IVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQ 244
++L++ +QRD+ ++ L+E E++Q Q QQ
Sbjct: 330 VILMEQSETQRDEEFQQQQELVENQEEVQQEQEQQ 364
>AY128464-1|AAM75057.1| 659|Drosophila melanogaster RE19005p
protein.
Length = 659
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 276 RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 377
RR V+++ A+THR P +S + ++H H H
Sbjct: 58 RRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AY118949-1|AAM50809.1| 333|Drosophila melanogaster LD32459p
protein.
Length = 333
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 415 EDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFNRRMQSV 534
E+ NN K++EN + S + + L + NRR Q+V
Sbjct: 128 EEANNPMKLLENRTQQSRNEIETIESLEELRDLNRRQQTV 167
>AY070529-1|AAL48000.1| 746|Drosophila melanogaster GM13460p
protein.
Length = 746
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 409 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 501
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 279 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 308
>AY060958-1|AAL28506.1| 568|Drosophila melanogaster GM08907p
protein.
Length = 568
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 276 RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 377
RR V+++ A+THR P +S + ++H H H
Sbjct: 58 RRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE014297-3026|AAF55908.2| 1488|Drosophila melanogaster CG6349-PA
protein.
Length = 1488
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 409 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 501
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 1021 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 1050
>AE014296-1984|AAN11876.1| 649|Drosophila melanogaster CG6091-PC,
isoform C protein.
Length = 649
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 276 RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 377
RR V+++ A+THR P +S + ++H H H
Sbjct: 58 RRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE014296-1983|AAF50041.1| 649|Drosophila melanogaster CG6091-PA,
isoform A protein.
Length = 649
Score = 28.3 bits (60), Expect = 9.0
Identities = 12/34 (35%), Positives = 20/34 (58%)
Frame = +3
Query: 276 RRFRVFEQAAQTHRSVPAQSDVLQCGQYHVLHDH 377
RR V+++ A+THR P +S + ++H H H
Sbjct: 58 RRGEVYDELARTHRCSPHKSTRSKRREHHEAHAH 91
>AE013599-3100|AAF46652.3| 1634|Drosophila melanogaster CG10543-PA,
isoform A protein.
Length = 1634
Score = 28.3 bits (60), Expect = 9.0
Identities = 11/35 (31%), Positives = 22/35 (62%)
Frame = +2
Query: 140 IVLLQNVASQRDKRTTLEELLIERGEKIQMLQPQQ 244
++L++ +QRD+ ++ L+E E++Q Q QQ
Sbjct: 330 VILMEQSETQRDEEFQQQQELVENQEEVQQEQEQQ 364
>AE013599-2203|AAF58052.2| 333|Drosophila melanogaster CG8435-PA
protein.
Length = 333
Score = 28.3 bits (60), Expect = 9.0
Identities = 13/40 (32%), Positives = 21/40 (52%)
Frame = +1
Query: 415 EDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFNRRMQSV 534
E+ NN K++EN + S + + L + NRR Q+V
Sbjct: 128 EEANNPMKLLENRTQQSRNEIETIESLEELRDLNRRQQTV 167
>AB011813-1|BAA32745.1| 1415|Drosophila melanogaster DNA polymerase
alpha 180K subunit protein.
Length = 1415
Score = 28.3 bits (60), Expect = 9.0
Identities = 14/31 (45%), Positives = 21/31 (67%)
Frame = +1
Query: 409 NIEDYNNIFKVMENIRKHSNKNLNDQDELNI 501
NI DY+ ++K+ NI++ NK L Q EL+I
Sbjct: 1020 NITDYDQVYKIGHNIKQSVNK-LYKQLELDI 1049
Database: fruitfly
Posted date: Oct 23, 2007 1:17 PM
Number of letters in database: 24,988,368
Number of sequences in database: 53,049
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 27,652,443
Number of Sequences: 53049
Number of extensions: 566436
Number of successful extensions: 2035
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 1981
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2035
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2600432100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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