Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120869.seq
(628 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U13019-8|AAC24446.2| 238|Caenorhabditis elegans Hypothetical pr... 31 0.51
AC024859-15|AAK29973.1| 277|Caenorhabditis elegans Hypothetical... 29 3.6
Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical pr... 28 4.8
D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like prot... 28 6.3
AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a... 28 6.3
AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a... 28 6.3
AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a... 28 6.3
AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a... 28 6.3
Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical pr... 27 8.3
U29378-1|AAA68724.1| 168|Caenorhabditis elegans Hypothetical pr... 27 8.3
>U13019-8|AAC24446.2| 238|Caenorhabditis elegans Hypothetical
protein T12A2.7 protein.
Length = 238
Score = 31.5 bits (68), Expect = 0.51
Identities = 17/51 (33%), Positives = 26/51 (50%)
Frame = +1
Query: 403 KFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIYLEFNRRMQSVKNINKVK 555
++ E Y KVME++ H+ K L E + + NR+M +K KVK
Sbjct: 139 EYAAESYLQRNKVMEDLLTHAEKELRKTKEAVMEVHANRKMAQLKAGEKVK 189
>AC024859-15|AAK29973.1| 277|Caenorhabditis elegans Hypothetical
protein Y71H2AM.6 protein.
Length = 277
Score = 28.7 bits (61), Expect = 3.6
Identities = 13/36 (36%), Positives = 22/36 (61%)
Frame = +2
Query: 122 IMKYAKIVLLQNVASQRDKRTTLEELLIERGEKIQM 229
+ KY +++ N+ S R +R TL IE+GE+I +
Sbjct: 213 LSKYGHQLVIANMLSTRKQRVTLVRKNIEQGEEINL 248
>Z69794-1|CAA93679.2| 663|Caenorhabditis elegans Hypothetical
protein R03G8.1 protein.
Length = 663
Score = 28.3 bits (60), Expect = 4.8
Identities = 10/18 (55%), Positives = 12/18 (66%)
Frame = -1
Query: 433 ICYCNPQC*TCNWTRHSF 380
ICYC Q C+WTR +F
Sbjct: 641 ICYCKEQPKQCSWTRLNF 658
>D10877-1|BAA01645.1| 346|Caenorhabditis elegans hnRNP like protein
protein.
Length = 346
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 139 FRVFHNRT-VETTCKRRPHNIDGRQVD 62
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-8|AAL02515.2| 309|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform b protein.
Length = 309
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 139 FRVFHNRT-VETTCKRRPHNIDGRQVD 62
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-7|ABB51185.1| 308|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform c protein.
Length = 308
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 139 FRVFHNRT-VETTCKRRPHNIDGRQVD 62
F F +T V+ K+RPH IDG+ VD
Sbjct: 30 FVTFSGKTEVDAAMKQRPHIIDGKTVD 56
>AF038613-6|ABB51186.1| 347|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform d protein.
Length = 347
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 139 FRVFHNRT-VETTCKRRPHNIDGRQVD 62
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>AF038613-5|AAB92051.1| 346|Caenorhabditis elegans Human hnrnp a1
homolog protein1, isoform a protein.
Length = 346
Score = 27.9 bits (59), Expect = 6.3
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Frame = -1
Query: 139 FRVFHNRT-VETTCKRRPHNIDGRQVD 62
F F +T V+ K+RPH IDG+ VD
Sbjct: 68 FVTFSGKTEVDAAMKQRPHIIDGKTVD 94
>Z68105-2|CAA92118.1| 270|Caenorhabditis elegans Hypothetical
protein F13E6.3 protein.
Length = 270
Score = 27.5 bits (58), Expect = 8.3
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = -3
Query: 566 VAVVFTLLIFFTLCIRRLNSKYMFNSSWSFKFLLLCFLIFS 444
+ VVF L+ F CI ++S S W K ++L F +FS
Sbjct: 48 IFVVFWLIFLFPACILEISS-----SIWLLKAVMLLFKLFS 83
>U29378-1|AAA68724.1| 168|Caenorhabditis elegans Hypothetical
protein F08C6.5 protein.
Length = 168
Score = 27.5 bits (58), Expect = 8.3
Identities = 14/35 (40%), Positives = 22/35 (62%)
Frame = -3
Query: 566 VAVVFTLLIFFTLCIRRLNSKYMFNSSWSFKFLLL 462
VAVV+T +I LC+R + S+ + WS++ L L
Sbjct: 42 VAVVYTCIIISNLCMRVIKSEEV---KWSWQVLFL 73
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,291,935
Number of Sequences: 27780
Number of extensions: 297872
Number of successful extensions: 1023
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 979
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1023
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1374536540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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