Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120869.seq
         (628 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone este...    23   1.8  
AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.           23   1.8  
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   5.6  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    22   5.6  
AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.          22   5.6  
DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.              21   7.4  
AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precur...    21   7.4  
AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice...    21   9.8  

>AY647436-1|AAU81605.1|  567|Apis mellifera juvenile hormone
           esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 307 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 459
           KH++   L R YY  +N +  TT+++   V++ +F I D     ++   + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433


>AB083009-1|BAC54130.1|  567|Apis mellifera esterase protein.
          Length = 567

 Score = 23.4 bits (48), Expect = 1.8
 Identities = 13/52 (25%), Positives = 27/52 (51%), Gaps = 1/52 (1%)
 Frame = +1

Query: 307 KHIDPYPLSRMYYNAANTMFYTTMENYA-VSNCKFNIEDYNNIFKVMENIRK 459
           KH++   L R YY  +N +  TT+++   V++ +F I D     ++   + +
Sbjct: 382 KHVEVARLIRNYYFESNKIDETTLKHLIDVASDRFFITDGEKAARMQAKVNR 433


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 8/19 (42%), Positives = 10/19 (52%)
 Frame = +2

Query: 359 PCFTRPWKTMPCPIASSTL 415
           PCF  P  ++P P A   L
Sbjct: 469 PCFEEPLPSLPLPGADDDL 487


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 10/29 (34%), Positives = 16/29 (55%)
 Frame = +3

Query: 243 NTSTRYRNSVLRRFRVFEQAAQTHRSVPA 329
           N    YR+ +L  FR  + A+Q H+ + A
Sbjct: 3   NQKEHYRHILLFYFRKGKNASQAHKKLCA 31


>AF084556-1|AAC71015.1|  652|Apis mellifera pipsqueak protein.
          Length = 652

 Score = 21.8 bits (44), Expect = 5.6
 Identities = 9/22 (40%), Positives = 15/22 (68%)
 Frame = +2

Query: 374 PWKTMPCPIASSTLRITITYLR 439
           P +T P P +++ +  TIT+LR
Sbjct: 293 PPETQPTPPSATLVGTTITHLR 314


>DQ435331-1|ABD92646.1|  135|Apis mellifera OBP14 protein.
          Length = 135

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 8/11 (72%), Positives = 9/11 (81%)
 Frame = +1

Query: 406 FNIEDYNNIFK 438
           FNI D NN+FK
Sbjct: 70  FNILDKNNVFK 80


>AY127579-1|AAN02286.1|  405|Apis mellifera venom protease precursor
           protein.
          Length = 405

 Score = 21.4 bits (43), Expect = 7.4
 Identities = 10/32 (31%), Positives = 14/32 (43%)
 Frame = +1

Query: 385 YAVSNCKFNIEDYNNIFKVMENIRKHSNKNLN 480
           Y+ S C + I  Y+ I      +    NKN N
Sbjct: 65  YSGSKCTWTITSYHRINLKCSLVEFSENKNCN 96


>AY268031-1|AAP23056.1|  810|Apis mellifera dorsal protein splice
           variant B protein.
          Length = 810

 Score = 21.0 bits (42), Expect = 9.8
 Identities = 12/44 (27%), Positives = 21/44 (47%)
 Frame = +1

Query: 226 NVAAATIHQHGTEIPFCDDSEFLNRLLKHIDPYPLSRMYYNAAN 357
           N+A    H   T I + ++   +N   + I+   L+RMY +  N
Sbjct: 416 NIAQNIDHAKNTIIDYRNNDLSINEEKRTIENEQLNRMYKSYPN 459


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 173,177
Number of Sequences: 438
Number of extensions: 3818
Number of successful extensions: 14
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 14
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18704709
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)