Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120869.seq
         (628 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing ...    29   3.3  
At1g28400.1 68414.m03492 expressed protein similar to E6 (GI:100...    28   4.4  

>At5g53720.1 68418.m06676 RNA recognition motif (RRM)-containing
           protein contains InterPro entry IPR000504: RNA-binding
           region RNP-1 (RNA recognition motif) (RRM)
          Length = 100

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 12/28 (42%), Positives = 15/28 (53%)
 Frame = -1

Query: 103 CKRRPHNIDGRQVDCGRRHLQQRSHGVQ 20
           C+   H IDGR V+C   +L  R H  Q
Sbjct: 67  CENPNHTIDGRTVNCKLAYLGARVHNYQ 94


>At1g28400.1 68414.m03492 expressed protein similar to E6
           (GI:1000090) [Gossypium barbadense]
          Length = 335

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/42 (30%), Positives = 22/42 (52%)
 Frame = +1

Query: 379 ENYAVSNCKFNIEDYNNIFKVMENIRKHSNKNLNDQDELNIY 504
           ENYA      N  + N  +K  EN+++ S    N+ ++ N+Y
Sbjct: 174 ENYAKEEFNNNNNNNNYNYKYDENVKEESFPENNEDNKKNVY 215


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,095,118
Number of Sequences: 28952
Number of extensions: 256862
Number of successful extensions: 837
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 807
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 837
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1275599520
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)