Bombyx BLAST Result against tribolium

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120868.seq
         (630 letters)

Database: tribolium 
           336 sequences; 122,585 total letters

Searching.......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc gr...    24   1.2  
EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetyla...    21   6.4  
AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory recept...    21   6.4  
DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome ad...    21   8.5  

>DQ659254-1|ABG47452.1|  431|Tribolium castaneum imaginal disc
           growth factor 4 protein.
          Length = 431

 Score = 23.8 bits (49), Expect = 1.2
 Identities = 8/30 (26%), Positives = 18/30 (60%)
 Frame = +2

Query: 128 EQGNLQVKFVAKDIASSLKYVNCKQAVIVN 217
           + GN++ + + + +   L +VN  QA++ N
Sbjct: 108 DDGNIKYRTILESVDHRLAFVNSAQALVKN 137


>EU019711-1|ABU25223.1|  534|Tribolium castaneum chitin deacetylase
           1 protein.
          Length = 534

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 13/43 (30%), Positives = 20/43 (46%)
 Frame = +1

Query: 223 QKIQNDVQRVGSIPYTPAPDNVVKQGDPLYLQPHTVLITKEGV 351
           Q IQN      S  + P  +  V +G+P    PH+  +T + V
Sbjct: 463 QWIQNPRTITESKNFEPWREKCVVEGNPHCWVPHSCKLTSKEV 505


>AM292380-1|CAL23192.2|  489|Tribolium castaneum gustatory receptor
           candidate 59 protein.
          Length = 489

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 8/20 (40%), Positives = 14/20 (70%)
 Frame = -2

Query: 236 FCIFCQH*LSQLVYNLHILN 177
           FC+F Q+ L +++  LH L+
Sbjct: 96  FCLFYQNKLIEVISKLHKLD 115


>DQ157471-1|AAZ85125.1| 1639|Tribolium castaneum Down Syndrome
            adhesion molecule splicevariant 3.12.3.1 protein.
          Length = 1639

 Score = 21.0 bits (42), Expect = 8.5
 Identities = 8/27 (29%), Positives = 15/27 (55%)
 Frame = +2

Query: 548  IIHFANALVKSQRRDWVQA*HNVKRGR 628
            +++F     K    +W+Q  +NVK G+
Sbjct: 1521 MLYFVIEHKKKTSTEWIQVSNNVKLGQ 1547


  Database: tribolium
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 122,585
  Number of sequences in database:  336
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 147,510
Number of Sequences: 336
Number of extensions: 3068
Number of successful extensions: 7
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 7
length of database: 122,585
effective HSP length: 54
effective length of database: 104,441
effective search space used: 16188355
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)