Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120868.seq
         (630 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces p...    27   2.2  
SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase Snf21|...    26   5.2  
SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr ...    25   6.8  
SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7 |Schizos...    25   9.0  
SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomy...    25   9.0  

>SPAC22H12.05c |||fasciclin domain protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 728

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 10/20 (50%), Positives = 16/20 (80%)
 Frame = +1

Query: 331 LITKEGVIQLIMKSKLPYAV 390
           L+ K+GV+ L+ K KLP++V
Sbjct: 542 LLVKDGVVHLVDKVKLPFSV 561


>SPAC1250.01 |snf21|SPAC29A4.21|ATP-dependent DNA helicase
           Snf21|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1199

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 16/55 (29%), Positives = 32/55 (58%)
 Frame = -1

Query: 375 LALHN*LDNTLLGDEHCVRLQVQWVTLLDHVVWSRGIWYRPDSLYVVLYFLSTLT 211
           ++L+N   N +L DE  +   +Q ++L+ H++  +    R +  ++V+  LSTLT
Sbjct: 429 ISLYNNHLNGILADEMGLGKTIQTISLITHLIEKK----RQNGPFLVIVPLSTLT 479


>SPAC6F6.01 |||VIC sodium channel |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1854

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 15/40 (37%), Positives = 20/40 (50%), Gaps = 2/40 (5%)
 Frame = -1

Query: 291  DHVVWSRGIWYRP-DSLYVV-LYFLSTLTITACLQFTYFK 178
            D  V   GIW R    LY+V L FL T+     + +TY +
Sbjct: 1261 DFAVQKHGIWRRTFTGLYIVHLLFLLTIFYPCPIAYTYVR 1300


>SPAC13G7.01c |erg7|SPAC4G9.21c|lanosterol synthase Erg7
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 721

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 11/35 (31%), Positives = 23/35 (65%)
 Frame = +2

Query: 98  EDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQ 202
           E +FTL+ ++E G  + +    DIA +L++++ +Q
Sbjct: 386 ETSFTLQALVESGLYEKEAFKPDIAKALEFLDRQQ 420


>SPAC1F8.06 |fta5|sma5|Sim4 and Mal2 associated |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 385

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 17/56 (30%), Positives = 28/56 (50%)
 Frame = -2

Query: 413 SSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPCLTTLSGAGVYGIDPTR 246
           SSS   ++++  +   I+S    S V ST     YSG+   T +S +  Y + PT+
Sbjct: 109 SSSQTISASSSTTDNVIVSSSISSTVSSTPVSTIYSGTSGTTFVSSSTTYQVIPTQ 164


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,511,626
Number of Sequences: 5004
Number of extensions: 49298
Number of successful extensions: 141
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 141
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)