Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120868.seq
         (630 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)              34   0.11 
SB_40708| Best HMM Match : SRCR (HMM E-Value=0)                        31   1.0  
SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)              30   1.8  
SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)                 27   9.5  
SB_50322| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-33)                 27   9.5  
SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)               27   9.5  
SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)                    27   9.5  
SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)                       27   9.5  

>SB_49425| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 429

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 22/66 (33%), Positives = 33/66 (50%), Gaps = 6/66 (9%)
 Frame = -2

Query: 341 LVMSTVCGCRYSGSPCLTTLSGAGVYGIDPTRCTSFC------IFCQH*LSQLVYNLHIL 180
           +VM TVC CRY  S C+ +L    V  I  T C S C      + C    S+ V+++ + 
Sbjct: 246 VVMCTVCACRYVHSVCV-SLRSQCVRVIMYTVCVSLCAQCMRVVMCTVCASRYVHSVCVS 304

Query: 179 NCWRCL 162
            C +C+
Sbjct: 305 LCTQCM 310


>SB_40708| Best HMM Match : SRCR (HMM E-Value=0)
          Length = 1976

 Score = 30.7 bits (66), Expect = 1.0
 Identities = 22/67 (32%), Positives = 28/67 (41%)
 Frame = +2

Query: 218 VDKKYKTTYSESGLYHIPRLQTTWSSKVTHCTCSRTQCSSPRRVLSN*L*RASSLTLWNC 397
           VDK Y  T  ES ++  P  Q  W+S+  H   +   CS P         +  S     C
Sbjct: 211 VDKLY-CTGGESNIFDCPMKQMHWNSECYHVNDAGVICSGP---------QTGSPMSNTC 260

Query: 398 RRGCWRR 418
           RR C RR
Sbjct: 261 RRSCQRR 267


>SB_45157| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 2870

 Score = 29.9 bits (64), Expect = 1.8
 Identities = 17/54 (31%), Positives = 30/54 (55%)
 Frame = +2

Query: 77  IGEFKFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKT 238
           I +F+FG        ++   + ++KF AK+IA + K++   QAV ++  K Y T
Sbjct: 116 IPDFRFGCSDLYFVCLMTPKSTEIKFDAKEIADA-KWMETSQAVYLDKGKYYYT 168


>SB_29730| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 4275

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 16/54 (29%), Positives = 26/54 (48%)
 Frame = +2

Query: 89   KFGEDTFTLRYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYSE 250
            K GED F +  +L++G   V  V  D+ +S     CK+ ++      Y+  Y E
Sbjct: 2045 KIGEDAFQVFSILQKGKGVVVDVPGDVFNSFVESGCKREILERCFDMYR-AYKE 2097


>SB_50323| Best HMM Match : 7tm_1 (HMM E-Value=1.1e-34)
          Length = 411

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = -1

Query: 303 VTLLDHVVWSRGIWYRPDSLYVVLYFLSTLT 211
           V ++D +  +RG++  P  LY + +FL+TL+
Sbjct: 254 VIVMDIIDMTRGLFSLPRELYFLYFFLATLS 284


>SB_50322| Best HMM Match : 7tm_1 (HMM E-Value=3.4e-33)
          Length = 418

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 303 VTLLDHVVWSRGIWYRPDSLYVVLYFLSTLT 211
           V ++D +  SRG++  P  LY++  FL+TL+
Sbjct: 256 VIVMDIIDMSRGLFSLPRELYLLYSFLATLS 286


>SB_11799| Best HMM Match : Keratin_B2 (HMM E-Value=0.69)
          Length = 430

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 23/92 (25%), Positives = 39/92 (42%)
 Frame = -2

Query: 473 CVHLDGRRVLARAQHCGITSSSSHACNSTA*GSLLFIISWITPSLVMSTVCGCRYSGSPC 294
           C H   + + A  Q   ++   +  C  T+   L   +     S +    C C+++ S  
Sbjct: 213 CQHTSSKVLSAYVQQGVVSIRPARCCQHTSSKVLSAYVQQGVVS-IRPARC-CQHTSSKV 270

Query: 293 LTTLSGAGVYGIDPTRCTSFCIFCQH*LSQLV 198
           L+T   +GV  I P RC      CQH  S+++
Sbjct: 271 LSTYVQSGVVSIRPARC------CQHTSSKVL 296


>SB_5915| Best HMM Match : zf-TAZ (HMM E-Value=0.06)
          Length = 285

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 16/49 (32%), Positives = 25/49 (51%)
 Frame = -1

Query: 510 ATFYLTLQSHHNLCPS*RPARTCPCTALRNHLLQQPRLQFHSVRELALH 364
           A+F+LTL  +  L      A   PC     + + QPR + + ++ LALH
Sbjct: 16  ASFHLTLHDNQFL----GRASEQPCDVTGEYYINQPRDRIYPIKLLALH 60


>SB_43935| Best HMM Match : 7tm_1 (HMM E-Value=0)
          Length = 842

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 12/31 (38%), Positives = 21/31 (67%)
 Frame = -1

Query: 303 VTLLDHVVWSRGIWYRPDSLYVVLYFLSTLT 211
           V ++D +  SRG++  P  LY++  FL+TL+
Sbjct: 686 VIVMDIIDMSRGLFSLPRELYLLYSFLATLS 716


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 19,515,104
Number of Sequences: 59808
Number of extensions: 401527
Number of successful extensions: 1023
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 899
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1019
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)