Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120868.seq
         (630 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AE014134-1591|AAF52734.1|  275|Drosophila melanogaster CG9555-PA...    30   2.2  
AY069169-1|AAL39314.1|  461|Drosophila melanogaster GH20973p pro...    29   5.2  
AE013599-4017|AAM68328.1|  461|Drosophila melanogaster CG2679-PB...    29   5.2  

>AE014134-1591|AAF52734.1|  275|Drosophila melanogaster CG9555-PA
           protein.
          Length = 275

 Score = 30.3 bits (65), Expect = 2.2
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -2

Query: 374 LLFIISWITPSLVMSTVCGC 315
           + FI+ W  P L + TVCGC
Sbjct: 210 IYFILDWERPGLAIGTVCGC 229


>AY069169-1|AAL39314.1|  461|Drosophila melanogaster GH20973p
           protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 116 RYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYS 247
           + V++   +Q+K   ++IA+ + Y N  Q + + +DK Y  T S
Sbjct: 173 KQVMQLEKMQIKGKTRNIAAVITYQNIGQDLSLTLDKGYNVTIS 216


>AE013599-4017|AAM68328.1|  461|Drosophila melanogaster CG2679-PB,
           isoform B protein.
          Length = 461

 Score = 29.1 bits (62), Expect = 5.2
 Identities = 13/44 (29%), Positives = 25/44 (56%)
 Frame = +2

Query: 116 RYVLEQGNLQVKFVAKDIASSLKYVNCKQAVIVNVDKKYKTTYS 247
           + V++   +Q+K   ++IA+ + Y N  Q + + +DK Y  T S
Sbjct: 173 KQVMQLEKMQIKGKTRNIAAVITYQNIGQDLSLTLDKGYNVTIS 216


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 28,025,436
Number of Sequences: 53049
Number of extensions: 580451
Number of successful extensions: 1549
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1502
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1549
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2621070450
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)