Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120868.seq
         (630 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase doma...    23   3.2  
L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.          21   7.5  
L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.          21   9.9  
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   9.9  
AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase pr...    21   9.9  

>DQ067178-1|AAZ20250.1|  448|Apis mellifera conserved ATPase domain
           protein protein.
          Length = 448

 Score = 22.6 bits (46), Expect = 3.2
 Identities = 10/34 (29%), Positives = 17/34 (50%)
 Frame = +3

Query: 456 AVKMDTNYGVIEELNKKLRLLAKVWPRPTKKLYI 557
           AV++      I  + K++  +A  WP  T  LY+
Sbjct: 331 AVRIQRQENNIRPMVKQIDTVAAEWPATTNYLYL 364


>L10430-1|AAA27731.1|  150|Apis mellifera transposase protein.
          Length = 150

 Score = 21.4 bits (43), Expect = 7.5
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 316 QPHTVLITKEGVIQL 360
           +PHT L+T++ +++L
Sbjct: 127 RPHTYLVTRQKLLEL 141


>L10433-1|AAA27732.1|  149|Apis mellifera transposase protein.
          Length = 149

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 316 QPHTVLITKEGVIQL 360
           +PHT L+T++ +++L
Sbjct: 126 RPHTSLVTRQKLLEL 140


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 9/26 (34%), Positives = 15/26 (57%)
 Frame = +2

Query: 548  IIHFANALVKSQRRDWVQA*HNVKRG 625
            +I+F     K  +++W Q  +NVK G
Sbjct: 1491 MIYFVVEHKKKNQQEWNQVSNNVKPG 1516


>AY155490-1|AAO12861.1|  342|Apis mellifera Ammar1 transposase
           protein.
          Length = 342

 Score = 21.0 bits (42), Expect = 9.9
 Identities = 6/15 (40%), Positives = 13/15 (86%)
 Frame = +1

Query: 316 QPHTVLITKEGVIQL 360
           +PHT L+T++ +++L
Sbjct: 248 RPHTSLVTRQKLLEL 262


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 170,661
Number of Sequences: 438
Number of extensions: 3336
Number of successful extensions: 6
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18826962
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)