Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120868.seq
         (630 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine...    28   4.4  
At4g05095.1 68417.m00757 hypothetical protein                          27   7.8  
At2g19190.1 68415.m02239 light-responsive receptor protein kinas...    27   7.8  
At1g16130.1 68414.m01933 wall-associated kinase, putative simila...    27   7.8  

>At4g29600.1 68417.m04219 cytidine deaminase, putative / cytidine
           aminohydrolase, putative identical to cytidine deaminase
           7 (CDA7) [Arabidopsis thaliana] GI:3818574, cytidine
           deaminase homolog DesC [Arabidopsis thaliana]
           GI:4836445; similar to cytidine deaminase (CDD)
           [Arabidopsis thaliana] GI:3046700; contains Pfam profile
           PF00383: Cytidine and deoxycytidylate deaminase
           zinc-binding
          Length = 307

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 13/38 (34%), Positives = 20/38 (52%)
 Frame = +1

Query: 259 IPYTPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKS 372
           +PY   PD+V+ +G PL L+     +T  G  + I  S
Sbjct: 148 LPYRFTPDDVLPKGSPLLLEKRDNCLTLSGSTEEICSS 185


>At4g05095.1 68417.m00757 hypothetical protein
          Length = 138

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/24 (45%), Positives = 16/24 (66%)
 Frame = -3

Query: 550 NFFVGLGQTFASKRNFLFNSSITP 479
           + F G G +FA   NF+F +S+TP
Sbjct: 24  HLFFGCGVSFAVWGNFMFRASLTP 47


>At2g19190.1 68415.m02239 light-responsive receptor protein kinase /
           senescence-responsive receptor-like serine/threonine
           kinase, putative (SIRK) similar to light repressible
           receptor protein kinase [Arabidopsis thaliana]
           gi|1321686|emb|CAA66376; contains Pfam profiles PF00069:
           Protein kinase domain and PF00560: Leucine Rich Repeat
          Length = 876

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 18/76 (23%), Positives = 36/76 (47%), Gaps = 1/76 (1%)
 Frame = +1

Query: 268 TPAPDNVVKQGDPLYLQPHTVLITKEGVIQLIMKSKLPYAVEL-QAWLLEEVIPQCCARA 444
           T  P     + + +++  H   I   G I+ I+  +L    ++  AW + E+   C    
Sbjct: 769 TGQPAIASSKTEKVHISDHVRSILANGDIRGIVDQRLRERYDVGSAWKMSEIALACTEHT 828

Query: 445 STRRPSRWTQIMV*LK 492
           S +RP+  +Q+++ LK
Sbjct: 829 SAQRPT-MSQVVMELK 843


>At1g16130.1 68414.m01933 wall-associated kinase, putative similar
           to putative serine/threonine-specific protein kinase
           GI:7270012 from [Arabidopsis thaliana]
          Length = 748

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = +1

Query: 256 SIPYTPAPDNVVKQGDPLYLQPHTVLI 336
           S P TP P NV  QG P +L    +L+
Sbjct: 106 SQPLTPPPLNVAGQGSPYFLTDKNLLV 132


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,336,183
Number of Sequences: 28952
Number of extensions: 264417
Number of successful extensions: 629
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 616
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 629
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)