Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120867.seq
         (629 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    28   0.97 
SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces pomb...    27   2.2  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    27   3.0  
SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces pomb...    26   3.9  
SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual    26   5.2  
SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    25   6.8  
SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.0  

>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 28.3 bits (60), Expect = 0.97
 Identities = 12/31 (38%), Positives = 18/31 (58%)
 Frame = +2

Query: 20  FLLGTTLPQTLKKPTDEEYLPEDAFNYMLST 112
           +L  TT P ++     EEY P + F Y+LS+
Sbjct: 433 YLTNTTYPTSIPGEQIEEYFPFEEFYYLLSS 463


>SPAC1B2.03c |||GNS1/SUR4 family protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 334

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/59 (30%), Positives = 28/59 (47%)
 Frame = -2

Query: 199 YGHVSF*HFYISAHFGDVINSINAELVGASR*HVIKRVLGQILFVGGLLERLRQRGAQQ 23
           Y H++F +F    H GD   S+ A   G     V+   L   LF+G  +    +RGA++
Sbjct: 240 YSHIAFRYFPWLPHVGDCSGSLFAAFFGCG---VLSSYL--FLFIGFYINTYIKRGAKK 293


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 14/37 (37%), Positives = 17/37 (45%)
 Frame = +1

Query: 238 YASRVNNLFRDLWNLDDENLITLALYVNKNKVSDMLH 348
           Y S  N    D W  DD N+I   L +    V+D LH
Sbjct: 176 YGSNNNTDIEDCWTGDD-NVILADLDIESTNVADYLH 211


>SPAC688.14 |||lysine methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 461

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = +1

Query: 445 VCLIADMFGNDAELSKLIWMLILPTKRTCSTTLIRTNSEFVNQHGE 582
           +C I+DMF  D EL  +    I  T    +T  I+   +  N +GE
Sbjct: 251 MCPISDMFNGDDELCNIRLYDINGTLTMIATRDIKKGEQLWNTYGE 296


>SPAC630.13c |tsc2||tuberin|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1339

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/35 (34%), Positives = 19/35 (54%)
 Frame = +1

Query: 466  FGNDAELSKLIWMLILPTKRTCSTTLIRTNSEFVN 570
            F N+A L K +W   L + +  +  L+ T S FV+
Sbjct: 1018 FRNEASLQKFLWEENLTSSKALTRGLLCTPSSFVS 1052


>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 25.4 bits (53), Expect = 6.8
 Identities = 12/25 (48%), Positives = 15/25 (60%)
 Frame = +2

Query: 71  EYLPEDAFNYMLSTSTDELSIYRIY 145
           E+ PE +  Y   TS DELS  +IY
Sbjct: 3   EHSPEASSTYAQVTSNDELSSNKIY 27


>SPAC30C2.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 842

 Score = 25.0 bits (52), Expect = 9.0
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 556 SEFVNQHGEFFFKEHNKII 612
           SE+ N +  F  KEH+K+I
Sbjct: 771 SEWENDYAPFLLKEHHKVI 789


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,433,029
Number of Sequences: 5004
Number of extensions: 46785
Number of successful extensions: 176
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 174
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 176
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 279695522
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)