Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120867.seq
         (629 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_06_1169 - 35082160-35082292,35082572-35082651,35082727-350829...    28   5.3  
02_02_0151 - 7220335-7220819,7220933-7223507                           27   9.3  

>01_06_1169 -
           35082160-35082292,35082572-35082651,35082727-35082939,
           35083243-35083323,35083381-35083492,35083697-35083786,
           35083986-35084176,35084683-35084762,35085266-35085347,
           35085506-35085590,35086261-35086379
          Length = 421

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 17/52 (32%), Positives = 25/52 (48%), Gaps = 7/52 (13%)
 Frame = +2

Query: 161 CRDVKMLKTNM-AIVNYMGNCNTCQADMRV------ALTTCFAICGIWTMKI 295
           C D   +  N+ + + +      C+A   V      AL + FAICGIW +KI
Sbjct: 43  CHDENSVYANLLSNIGFNTGLEVCKASYTVSLAYGGALKSDFAICGIWFLKI 94


>02_02_0151 - 7220335-7220819,7220933-7223507
          Length = 1019

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -1

Query: 395 GRDPDTVDRHGLHFKLCNMSETLFLFTYKASVIKFSSSK 279
           GR PD +DR  L  +  N+S   F     +++ +FS  K
Sbjct: 124 GRLPDRIDRLSLGMQHLNLSSNAFTGDVPSAIARFSKLK 162


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,289,252
Number of Sequences: 37544
Number of extensions: 284700
Number of successful extensions: 797
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 775
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 797
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1537558360
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)