Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120867.seq
         (629 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_54003| Best HMM Match : Lac_bphage_repr (HMM E-Value=2.5)           29   3.1  
SB_45586| Best HMM Match : EGF_2 (HMM E-Value=0.00035)                 29   4.1  
SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   5.4  
SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)               28   7.2  
SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)                       28   7.2  
SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)              28   7.2  
SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)                       27   9.5  
SB_56292| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  
SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   9.5  

>SB_54003| Best HMM Match : Lac_bphage_repr (HMM E-Value=2.5)
          Length = 252

 Score = 29.1 bits (62), Expect = 3.1
 Identities = 21/80 (26%), Positives = 37/80 (46%), Gaps = 1/80 (1%)
 Frame = -3

Query: 387 SRHR*PTRFTFQVVQHVGNLVLVYVQSKRNQIFIVQIPQIAKQVVNATRISAWHVL-QLP 211
           S HR   R+T Q  QH  +++ V      + +    +   A+ V+  +R    HV+ + P
Sbjct: 110 SSHRVLHRYTAQKHQHSEHIIPVLAPHMCSYVVYWVVISAARLVILCSRRLCGHVVSEFP 169

Query: 210 M*LTMAMLVFSIFTSRHILA 151
           +      LV  +  +RH+LA
Sbjct: 170 LVYCCECLVAYVVHARHVLA 189


>SB_45586| Best HMM Match : EGF_2 (HMM E-Value=0.00035)
          Length = 330

 Score = 28.7 bits (61), Expect = 4.1
 Identities = 18/70 (25%), Positives = 27/70 (38%)
 Frame = +2

Query: 71  EYLPEDAFNYMLSTSTDELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGNCNTCQADMRVA 250
           E L +D FN     + +  S +  Y I   C  +K         NY+ N   CQ ++   
Sbjct: 195 ELLSDDKFNASEKFNHNPSSNH--YSIPNPCDKLKCSNGGKCRANYVNNTGECQCELGFV 252

Query: 251 LTTCFAICGI 280
             TC   C +
Sbjct: 253 GDTCDERCDV 262


>SB_57228| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1056

 Score = 28.3 bits (60), Expect = 5.4
 Identities = 12/40 (30%), Positives = 21/40 (52%)
 Frame = +2

Query: 122 ELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGNCNTCQADM 241
           E  I +IY+  K  + VKM K +    N   +C+ C+ ++
Sbjct: 200 ESDIKKIYNTFKFSKKVKMSKKDKITYNNATHCHICEGEL 239


>SB_9670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 550

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 15/55 (27%), Positives = 29/55 (52%)
 Frame = -1

Query: 602 LCSLKKNSPCWLTNSLFVRINVVEHVRFVGKISIQINLLNSASLPNMSAIKQTFS 438
           + +LK    C L     +R N+   ++F+ K++   N+  S++LP    + Q+FS
Sbjct: 310 MTALKSMQYCCLLLQPHMRRNLQVLIKFMVKLAQNTNISLSSTLPTRELVIQSFS 364


>SB_9202| Best HMM Match : ig (HMM E-Value=5e-40)
          Length = 1604

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 12/28 (42%), Positives = 16/28 (57%)
 Frame = +1

Query: 538 TLIRTNSEFVNQHGEFFFKEHNKIIQYL 621
           T + TNS+ VNQH E  + +H   I  L
Sbjct: 503 TCVATNSQGVNQHSELLYVKHAPTITTL 530


>SB_12192| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1339

 Score = 27.9 bits (59), Expect = 7.2
 Identities = 21/63 (33%), Positives = 28/63 (44%), Gaps = 3/63 (4%)
 Frame = +1

Query: 268  DLWNLDDENLITLALYVNKNKVSDMLH---NLKCKPCRSTVSGSRPKCKCYKKIKINRKA 438
            DLW   D+   TLA  VNK + S + H    L CK        +  KCK   +I  +R  
Sbjct: 1103 DLWKYVDDT--TLAEVVNKGEESTVQHSLDELSCKVATDRFQLNEAKCK-ELRISFSRSE 1159

Query: 439  LKV 447
            + V
Sbjct: 1160 IDV 1162


>SB_1179| Best HMM Match : IQ (HMM E-Value=1e-04)
          Length = 474

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 17/56 (30%), Positives = 25/56 (44%)
 Frame = +2

Query: 23  LLGTTLPQTLKKPTDEEYLPEDAFNYMLSTSTDELSIYRIYHIAKMCRDVKMLKTN 190
           +LG  +P TL+  TD   + +D    +L    D  S Y    +     D+KM  TN
Sbjct: 72  ILGHIMPSTLEGRTDAPQIVDDELGQILQDQRDLESRYE--SLLSQREDIKMRFTN 125


>SB_56292| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 467

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = -1

Query: 599 CSLKKNSPCWLTNSLFVRI 543
           CS+KK +PC+L NSL  ++
Sbjct: 27  CSVKKMAPCFLDNSLLSQL 45


>SB_39625| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 902

 Score = 27.5 bits (58), Expect = 9.5
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +2

Query: 2   GTRNCPFLLGTTLPQTLKKPTDE 70
           G    PFLLG TL Q L   TDE
Sbjct: 172 GLNQSPFLLGVTLEQHLNTYTDE 194


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,518,636
Number of Sequences: 59808
Number of extensions: 360763
Number of successful extensions: 1013
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 945
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1012
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1572561250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)