Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120867.seq
         (629 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical...    31   0.90 
Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical pr...    30   1.2  
Z77669-6|CAB01243.2|  371|Caenorhabditis elegans Hypothetical pr...    29   3.6  
U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical pr...    27   8.4  
U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase pro...    27   8.4  
U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase pro...    27   8.4  
U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase prot...    27   8.4  

>AL110484-18|CAB54409.1|  357|Caenorhabditis elegans Hypothetical
           protein Y38E10A.18 protein.
          Length = 357

 Score = 30.7 bits (66), Expect = 0.90
 Identities = 16/46 (34%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = +2

Query: 32  TTLPQTLKKP-TDEEYLPEDAFNYMLSTSTDELSIYRIYHIAKMCR 166
           T  P+ LK+P T     PED F+ +L+   D+L +Y +  I    R
Sbjct: 117 TAEPRRLKEPATSSAAEPEDGFSIILNMKHDDLLVYYVEEIRNSVR 162


>Z81573-3|CAB04624.3|  398|Caenorhabditis elegans Hypothetical
           protein M02G9.2 protein.
          Length = 398

 Score = 30.3 bits (65), Expect = 1.2
 Identities = 18/83 (21%), Positives = 35/83 (42%)
 Frame = +2

Query: 26  LGTTLPQTLKKPTDEEYLPEDAFNYMLSTSTDELSIYRIYHIAKMCRDVKMLKTNMAIVN 205
           L   +PQT +KPT    +P    + ++S      +   +  +  +CR+  +++     + 
Sbjct: 299 LSQAVPQTTEKPTQAVLIPIAPVSIVVSDPPTTTAAPTVITLGTICRNECLVQCEHQCLP 358

Query: 206 YMGNCNTCQADMRVALTTCFAIC 274
              NC      M    TTC+ +C
Sbjct: 359 NNPNC------MAACQTTCYPVC 375


>Z77669-6|CAB01243.2|  371|Caenorhabditis elegans Hypothetical
           protein T07F10.3 protein.
          Length = 371

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 3/43 (6%)
 Frame = +2

Query: 65  DEEYLPEDAFNYMLSTSTDELS---IYRIYHIAKMCRDVKMLK 184
           ++ Y P   FN  +S+  D+++   +YRI+   + CR  KM +
Sbjct: 147 NDSYNPNSEFNLHVSSVPDDMADAELYRIFDKYQSCRGAKMFR 189


>U64851-2|AAC47987.1|  613|Caenorhabditis elegans Hypothetical
           protein F28A12.1 protein.
          Length = 613

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 3/75 (4%)
 Frame = +2

Query: 50  LKKPTDEEYLPEDAFNYMLSTSTDELSIY---RIYHIAKMCRDVKMLKTNMAIVNYMGNC 220
           +KK      L E+  NY+L+T T+ + ++    I+ + +   +  +   N      +   
Sbjct: 120 IKKLNSSGDLSEELLNYLLATKTNSMYMFNNANIFELKRAHLNALVYLANHPDFEIVNFL 179

Query: 221 NTCQADMRVALTTCF 265
           N+ Q D      TCF
Sbjct: 180 NSAQFDCDELFETCF 194


>U55854-11|AAT81209.1|  570|Caenorhabditis elegans Map kinase
           protein 2, isoform c protein.
          Length = 570

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 412 KKIKINRKALKVCLIA--DMFGNDAELSKLIWMLILPTKRTCSTTLIRTNSEFVNQHGEF 585
           ++++I R+ L   +IA  DMF  +    K I+ L++    T    ++ +    + QH ++
Sbjct: 68  REVRILRELLHENIIAVLDMFTAEGAHGKDIY-LVMDLMETDLHQILHSRQTLMEQHFQY 126

Query: 586 FFKEHNKIIQYLVS 627
           FF +  + ++YL S
Sbjct: 127 FFYQLLRGLKYLHS 140


>U55854-10|AAN60533.1|  426|Caenorhabditis elegans Map kinase
           protein 2, isoform b protein.
          Length = 426

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 412 KKIKINRKALKVCLIA--DMFGNDAELSKLIWMLILPTKRTCSTTLIRTNSEFVNQHGEF 585
           ++++I R+ L   +IA  DMF  +    K I+ L++    T    ++ +    + QH ++
Sbjct: 103 REVRILRELLHENIIAVLDMFTAEGAHGKDIY-LVMDLMETDLHQILHSRQTLMEQHFQY 161

Query: 586 FFKEHNKIIQYLVS 627
           FF +  + ++YL S
Sbjct: 162 FFYQLLRGLKYLHS 175


>U55854-9|AAA98016.3|  605|Caenorhabditis elegans Map kinase protein
           2, isoform a protein.
          Length = 605

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 19/74 (25%), Positives = 39/74 (52%), Gaps = 2/74 (2%)
 Frame = +1

Query: 412 KKIKINRKALKVCLIA--DMFGNDAELSKLIWMLILPTKRTCSTTLIRTNSEFVNQHGEF 585
           ++++I R+ L   +IA  DMF  +    K I+ L++    T    ++ +    + QH ++
Sbjct: 103 REVRILRELLHENIIAVLDMFTAEGAHGKDIY-LVMDLMETDLHQILHSRQTLMEQHFQY 161

Query: 586 FFKEHNKIIQYLVS 627
           FF +  + ++YL S
Sbjct: 162 FFYQLLRGLKYLHS 175


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,751,586
Number of Sequences: 27780
Number of extensions: 274654
Number of successful extensions: 874
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 874
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1385109898
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)