Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120867.seq
         (629 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains P...    28   4.4  
At1g53240.1 68414.m06033 malate dehydrogenase [NAD], mitochondri...    28   4.4  
At3g45320.1 68416.m04893 hypothetical protein                          28   5.9  
At3g04670.1 68416.m00500 WRKY family transcription factor simila...    28   5.9  
At1g75790.1 68414.m08803 multi-copper oxidase type I family prot...    28   5.9  
At5g01800.1 68418.m00099 saposin B domain-containing protein con...    27   7.8  
At2g32610.1 68415.m03981 cellulose synthase family protein simil...    27   7.8  

>At4g40000.1 68417.m05664 NOL1/NOP2/sun family protein contains Pfam
           profile PF01189: NOL1/NOP2/sun family
          Length = 783

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 12/20 (60%), Positives = 16/20 (80%)
 Frame = +1

Query: 502 MLILPTKRTCSTTLIRTNSE 561
           +LI  TKRTC+T L+ TN+E
Sbjct: 226 LLIHQTKRTCTTNLMVTNNE 245


>At1g53240.1 68414.m06033 malate dehydrogenase [NAD], mitochondrial
           identical to mitochondrial NAD-dependent malate
           dehydrogenase GI:3929649 SP|Q9ZP06 from [Arabidopsis
           thaliana]; contains InterPro entry IPR001236:
           Lactate/malate dehydrogenase
          Length = 341

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/44 (31%), Positives = 22/44 (50%)
 Frame = +2

Query: 104 LSTSTDELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGNCNTCQA 235
           L+     LS+Y I +   +  DV  + T   +V YMG+ N  +A
Sbjct: 51  LNPLVSSLSLYDIANTPGVAADVGHINTRSEVVGYMGDDNLAKA 94


>At3g45320.1 68416.m04893 hypothetical protein 
          Length = 166

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 14/40 (35%), Positives = 23/40 (57%)
 Frame = -3

Query: 330 LVLVYVQSKRNQIFIVQIPQIAKQVVNATRISAWHVLQLP 211
           ++L++     N ++IVQ P IAK+VV+ T+     V   P
Sbjct: 71  VILLHKTKGYNLMWIVQSPTIAKKVVDHTKAGTCSVTSSP 110


>At3g04670.1 68416.m00500 WRKY family transcription factor similar
           to elicitor response element binding protein WRKY3
           isolog GB:AAB63078 [Arabidopsis thaliana]
          Length = 330

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 17/45 (37%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
 Frame = +1

Query: 334 SDMLHNLKCKPCRSTVS-GSRPKCKCYKKIKIN-RKALKVCLIAD 462
           SD  H  K   C  ++  GSR KC C KK K+  ++++KV  I++
Sbjct: 213 SDQQHTRKM--CSGSLKCGSRSKCHCSKKRKLRVKRSIKVPAISN 255


>At1g75790.1 68414.m08803 multi-copper oxidase type I family protein
           contains Pfam profile: PF00394 Multicopper oxidase
          Length = 545

 Score = 27.9 bits (59), Expect = 5.9
 Identities = 11/43 (25%), Positives = 23/43 (53%)
 Frame = +2

Query: 89  AFNYMLSTSTDELSIYRIYHIAKMCRDVKMLKTNMAIVNYMGN 217
           +++ +++  TD + IYR Y+I    R        +A++ Y G+
Sbjct: 258 SYSILVTAKTDPVGIYRSYYIFATARFTDSYLGGIALIRYPGS 300


>At5g01800.1 68418.m00099 saposin B domain-containing protein
           contains Pfam profiles: PF00026 eukaryotic aspartyl
           protease, PF03489 surfactant protein B, PF05184
           saposin-like type B, region 1
          Length = 217

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 16/40 (40%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
 Frame = +1

Query: 334 SDMLHNLKCKPCRSTVSGSRPKCKCYK-KIKINRKALKVC 450
           +  +H   C+ CR TVS    K K  + K+KI R  LK C
Sbjct: 118 ASQVHQGNCEACRETVSEVVTKLKDPETKLKIIRLLLKEC 157


>At2g32610.1 68415.m03981 cellulose synthase family protein similar
           to Zea mays cellulose synthase-3 [gi:9622878], -2
           [gi:9622876], -1 [gi:9622874]
          Length = 757

 Score = 27.5 bits (58), Expect = 7.8
 Identities = 11/44 (25%), Positives = 25/44 (56%)
 Frame = +1

Query: 229 PSRYASRVNNLFRDLWNLDDENLITLALYVNKNKVSDMLHNLKC 360
           P+ +++ V  ++ +   + DE  I   +Y+++ K  + +HN KC
Sbjct: 229 PNDHSTLVKVVWENKGGVGDEKEIPHIIYISREKRPNYVHNQKC 272


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,632,576
Number of Sequences: 28952
Number of extensions: 240916
Number of successful extensions: 690
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 680
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 690
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1285411824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)