Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120865.seq
         (622 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   107   1e-24
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   107   1e-24
SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomy...    29   0.72 
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    27   2.2  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   2.9  
SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein S4|Schizosacch...    26   5.1  
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch...    25   8.8  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  107 bits (258), Expect = 1e-24
 Identities = 56/101 (55%), Positives = 65/101 (64%)
 Frame = -2

Query: 558 YVVLRIRVPTWXPASVHCLRVPTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLS 379
           YV+ RIRV           +  TYGKP   GVN LK  R+ +  AEE           L+
Sbjct: 59  YVIYRIRVRRGGRKRP-VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLN 117

Query: 378 SYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKH 256
           SYWV QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKH
Sbjct: 118 SYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKH 158



 Score = 55.6 bits (128), Expect = 5e-09
 Identities = 26/45 (57%), Positives = 32/45 (71%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E RGLTS G+ SRG+GKGHR++ +    + A WLR NTL LRR R
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRFNNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  107 bits (258), Expect = 1e-24
 Identities = 56/101 (55%), Positives = 65/101 (64%)
 Frame = -2

Query: 558 YVVLRIRVPTWXPASVHCLRVPTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLS 379
           YV+ RIRV           +  TYGKP   GVN LK  R+ +  AEE           L+
Sbjct: 59  YVIYRIRVRRGGRKRP-VPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLN 117

Query: 378 SYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKH 256
           SYWV QD++YK+FEVILVDPSHKAIRRDP+INWIVN VHKH
Sbjct: 118 SYWVNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKH 158



 Score = 57.2 bits (132), Expect = 2e-09
 Identities = 27/45 (60%), Positives = 32/45 (71%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E RGLTS G+ SRG+GKGHRY+ +    + A WLR NTL LRR R
Sbjct: 160 ESRGLTSIGKKSRGIGKGHRYNNS---PQHATWLRHNTLSLRRYR 201


>SPBP35G2.06c |nup131|Nup133a|nucleoporin Nup131|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1142

 Score = 28.7 bits (61), Expect = 0.72
 Identities = 14/38 (36%), Positives = 22/38 (57%)
 Frame = -3

Query: 368 LHKILHTSISRLSSWTRHTRPFVAILRSTGS*MLYISI 255
           L+KIL  S  ++ ++T H  P V ++ S     LYIS+
Sbjct: 47  LYKILQISAPKVGNFTIHDAPVVGLIDSILEYYLYISV 84


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 27.1 bits (57), Expect = 2.2
 Identities = 18/41 (43%), Positives = 24/41 (58%), Gaps = 2/41 (4%)
 Frame = -1

Query: 259 ASEMRG-LTSAGRSSRGLGKG-HRYSQTKGGSRRAAWLRRN 143
           A++ RG ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 229 ANKTRGAVSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = -2

Query: 363  QDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHK 259
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPBC21B10.10 |rps402|rps4-2|40S ribosomal protein
           S4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 262

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 19/46 (41%), Positives = 24/46 (52%), Gaps = 2/46 (4%)
 Frame = -1

Query: 289 DQLDRECCT*ASEMRGLTSAGRS--SRGLGKGHRYSQTKGGSRRAA 158
           D LDRE  T  S +  +  AG+S  S   GKG + S T+   RR A
Sbjct: 212 DALDREFATRLSNVFVIGEAGKSWISLPKGKGVKLSITEERDRRRA 257


>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2609

 Score = 25.0 bits (52), Expect = 8.8
 Identities = 11/18 (61%), Positives = 13/18 (72%)
 Frame = -1

Query: 406 SLRWSPCVELLLGCTRFF 353
           SL+  P V LL+G TRFF
Sbjct: 568 SLKVPPLVPLLIGTTRFF 585


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,354,758
Number of Sequences: 5004
Number of extensions: 43593
Number of successful extensions: 110
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 106
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)