Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120865.seq
(622 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_03_0257 + 11145558-11145876,11148181-11148347,11149114-111493... 100 2e-21
03_05_0228 - 22137771-22138016,22138109-22138306,22138852-221390... 100 2e-21
06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687 31 0.009
06_03_0191 - 17720512-17721435,17721718-17721843,17721940-177221... 31 0.97
01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345 30 1.3
03_02_0972 - 12816807-12817016,12817099-12817215,12817963-128181... 30 1.7
01_01_0652 + 4975091-4975585 29 2.3
09_02_0328 - 7293547-7293855,7294161-7294274,7294348-7294429,729... 29 3.9
02_01_0067 + 487231-487530,487580-487675,487716-487862 28 6.9
10_08_0857 + 21104688-21104833,21105046-21105274 27 9.1
>05_03_0257 +
11145558-11145876,11148181-11148347,11149114-11149311,
11149405-11149650
Length = 309
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/101 (49%), Positives = 62/101 (61%)
Frame = -2
Query: 558 YVVLRIRVPTWXPASVHCLRVPTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLS 379
YVV R+RV + YGKPK G+ QLK RN +S+AEE L+
Sbjct: 164 YVVYRVRVRRGGRKRPVPKGI-VYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLN 222
Query: 378 SYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKH 256
SYWV +DS+YKYFE+ILVD +H AIR DP+INW+ VHKH
Sbjct: 223 SYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKH 263
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -1
Query: 253 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
E+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 265 ELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 309
>03_05_0228 -
22137771-22138016,22138109-22138306,22138852-22139018,
22139129-22139132
Length = 204
Score = 99.5 bits (237), Expect = 2e-21
Identities = 50/101 (49%), Positives = 62/101 (61%)
Frame = -2
Query: 558 YVVLRIRVPTWXPASVHCLRVPTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLS 379
YVV R+RV + YGKPK G+ QLK RN +S+AEE L+
Sbjct: 59 YVVYRVRVRRGGRKRPVPKGI-VYGKPKHQGITQLKFQRNKRSVAEERAGRKLGGLRVLN 117
Query: 378 SYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKH 256
SYWV +DS+YKYFE+ILVD +H AIR DP+INW+ VHKH
Sbjct: 118 SYWVNEDSTYKYFEIILVDVAHSAIRNDPRINWLCKPVHKH 158
Score = 50.4 bits (115), Expect = 1e-06
Identities = 26/46 (56%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
Frame = -1
Query: 253 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
E+RGLTSAG+ RGL GKGH + + + SRRA W R T+ LRR R
Sbjct: 160 ELRGLTSAGKKYRGLRGKGHTHHKAR-PSRRATWKRNQTVSLRRYR 204
>06_02_0082 + 11536799-11537554,11538210-11538334,11538507-11538687
Length = 353
Score = 31.5 bits (68), Expect(2) = 0.009
Identities = 13/18 (72%), Positives = 15/18 (83%)
Frame = -2
Query: 342 FEVILVDPSHKAIRRDPK 289
FE+ILVD +H AIR DPK
Sbjct: 299 FEIILVDVAHSAIRDDPK 316
Score = 25.0 bits (52), Expect(2) = 0.009
Identities = 10/17 (58%), Positives = 11/17 (64%)
Frame = -2
Query: 489 YGKPKSHGVNQLKPTRN 439
Y KPK G+ QLK RN
Sbjct: 276 YSKPKHQGITQLKFQRN 292
>06_03_0191 - 17720512-17721435,17721718-17721843,17721940-17722140,
17722189-17722332,17722415-17722722,17723433-17723568,
17723748-17723841,17723976-17724073,17724951-17725004,
17725704-17726150,17726227-17726393,17726540-17726663,
17726751-17726837,17727000-17727056,17727492-17727560,
17727664-17727811,17727893-17728116,17728842-17728958,
17729649-17729742,17730573-17730640,17733278-17733334,
17733412-17733511,17733638-17733674,17734077-17734200,
17735254-17735322,17735371-17735410,17735905-17735993,
17736849-17736953,17737033-17737104,17737814-17737936,
17738049-17738117,17738966-17739059,17739145-17739231,
17740184-17740351,17740436-17740552,17741484-17741590,
17741671-17741803,17742564-17742667,17743504-17743629,
17744148-17744216,17744996-17745064,17745278-17745358,
17745444-17745533,17745896-17746000,17747803-17747873,
17748320-17748461,17749266-17749330,17750081-17750168,
17750236-17750325,17750437-17750673,17751064-17751170,
17751625-17751832,17752376-17752546
Length = 2366
Score = 30.7 bits (66), Expect = 0.97
Identities = 16/65 (24%), Positives = 33/65 (50%)
Frame = +2
Query: 59 SICIQK*ANGKSLTVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRS 238
++ +Q ++ S++V+D CL S+A CP A++ L ++ + S +AT
Sbjct: 1958 TLFLQGCSSKDSVSVIDECLKLLFLFHSLAQSKKCPQEATMLLLDALLMVFYSSSATGSQ 2017
Query: 239 QTTHL 253
+ T +
Sbjct: 2018 ELTEV 2022
>01_06_1709 + 39337720-39337785,39338103-39338310,39338705-39339345
Length = 304
Score = 30.3 bits (65), Expect = 1.3
Identities = 14/41 (34%), Positives = 19/41 (46%)
Frame = -1
Query: 247 RGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRR 125
+ L GR + G G + +GG RR AW RR + R
Sbjct: 136 KALVGVGRRAAGAGLQAVVPEARGGERRRAWRRRGLVATLR 176
>03_02_0972 -
12816807-12817016,12817099-12817215,12817963-12818111,
12818192-12818405,12818505-12818666
Length = 283
Score = 29.9 bits (64), Expect = 1.7
Identities = 18/36 (50%), Positives = 24/36 (66%), Gaps = 1/36 (2%)
Frame = -1
Query: 535 ADVVXRKRPLPKGAHLWQAQEPWCQPVEAHAQ-PSI 431
AD V +KR LP A+ + QEPWC+ + HA+ PSI
Sbjct: 147 ADGVAKKR-LPPVAN--RRQEPWCRLISQHAKNPSI 179
>01_01_0652 + 4975091-4975585
Length = 164
Score = 29.5 bits (63), Expect = 2.3
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -1
Query: 235 SAGRSSRGLGKGHRYSQTKGGSRRAAW 155
+AG+ GKG R + +GG RR W
Sbjct: 37 AAGKRREAAGKGGRQREARGGGRRMRW 63
>09_02_0328 -
7293547-7293855,7294161-7294274,7294348-7294429,
7295318-7295401,7296199-7296399,7296516-7296853,
7296968-7297084
Length = 414
Score = 28.7 bits (61), Expect = 3.9
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -1
Query: 259 ASEMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAA 158
A+ G++ +G G G+G KGGSR AA
Sbjct: 169 AARPAGVSGSGAGGGGRGRGRGSDDAKGGSRAAA 202
>02_01_0067 + 487231-487530,487580-487675,487716-487862
Length = 180
Score = 27.9 bits (59), Expect = 6.9
Identities = 19/78 (24%), Positives = 30/78 (38%)
Frame = -2
Query: 576 PX*NKVYVVLRIRVPTWXPASVHCLRVPTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXX 397
P + Y V R T P+ V + P Y KPK G + L+ A
Sbjct: 93 PNVDMAYEVTLERDMTNLPSEVGPVHAPRYPKPKEEGWWLKRARVKLEFTAASEAGRKEY 152
Query: 396 XXXXLSSYWVAQDSSYKY 343
+S Y++ +D Y++
Sbjct: 153 MIYLMSDYYLGRDQEYEF 170
>10_08_0857 + 21104688-21104833,21105046-21105274
Length = 124
Score = 27.5 bits (58), Expect = 9.1
Identities = 14/35 (40%), Positives = 19/35 (54%)
Frame = -1
Query: 256 SEMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWL 152
SE + ++GRS G G G R +G SR AW+
Sbjct: 2 SEALLVFASGRSIGGAGPGRRPHLRRGESREFAWI 36
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,503,788
Number of Sequences: 37544
Number of extensions: 338939
Number of successful extensions: 804
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 785
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 800
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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