Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120865.seq
         (622 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)             103   9e-23
SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)                  30   1.3  
SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)              29   4.0  
SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)               29   4.0  
SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)                 29   4.0  
SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)                       28   5.3  
SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)              27   9.3  

>SB_46389| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 204

 Score =  103 bits (248), Expect = 9e-23
 Identities = 48/79 (60%), Positives = 56/79 (70%)
 Frame = -2

Query: 492 TYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSH 313
           TYGKP + GVN+LK  R+L+S+AEE           L+SYWV QDS YKYFEVI+VDP H
Sbjct: 80  TYGKPVNQGVNELKFQRSLRSVAEERAGRYCGGLRVLNSYWVGQDSIYKYFEVIMVDPFH 139

Query: 312 KAIRRDPKINWIVNAVHKH 256
           KAIRRD +INWI    HKH
Sbjct: 140 KAIRRDARINWICKPTHKH 158



 Score = 61.3 bits (142), Expect = 6e-10
 Identities = 27/45 (60%), Positives = 33/45 (73%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E+RGLT+AG  +RG+ KGH Y++  G SRRA W R NTL LRR R
Sbjct: 160 ELRGLTAAGTKNRGMRKGHNYNKVIGSSRRANWKRHNTLSLRRYR 204


>SB_53390| Best HMM Match : Pox_A32 (HMM E-Value=0.14)
          Length = 498

 Score = 30.3 bits (65), Expect = 1.3
 Identities = 24/90 (26%), Positives = 41/90 (45%), Gaps = 5/90 (5%)
 Frame = +2

Query: 44  LSHWLSICIQ-K*ANGKSLTVLD----RCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLA 208
           L+ W+ + +Q    N  S TV+     R  +FAT + +V      P  A   + +S+ + 
Sbjct: 248 LTEWIVLYVQLSTGNYGSFTVVQLPNVRNATFATEIDNV------PNGAQETIAISLPID 301

Query: 209 ETSGAATSRSQTTHLRCLCTAFTIQLILGS 298
            T+G   SR  T  + C C    + L +G+
Sbjct: 302 NTTGLTASRGYTIRIECYCIDPNVMLTMGT 331


>SB_17746| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 407

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 164 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 298
           P  A   + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 190 PNGAQETIAISLPIDNTTGLTASRGYTIRIECYCIEPNVMLTMGT 234


>SB_4670| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 1012

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 12/45 (26%), Positives = 21/45 (46%)
 Frame = +2

Query: 164 PA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 298
           P  A   + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 302 PNGAQETIAISIPIDNTTGLTASRGYTIRIECYCIDTNVMLTMGT 346


>SB_10146| Best HMM Match : Collagen (HMM E-Value=0.09)
          Length = 536

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 11/38 (28%), Positives = 19/38 (50%)
 Frame = +2

Query: 185 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 298
           + +S+ +  T+G   SR  TT + C C      L +G+
Sbjct: 364 IAISLPIDNTTGLTASRGYTTRIECYCIDPNAMLTMGT 401


>SB_16274| Best HMM Match : PKD (HMM E-Value=3.5)
          Length = 351

 Score = 28.3 bits (60), Expect = 5.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 185 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 298
           + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 71  IAISLPIDNTTGLTASRGYTVRIGCYCIDSNVMLTMGT 108


>SB_56315| Best HMM Match : Collagen (HMM E-Value=0.00013)
          Length = 898

 Score = 27.5 bits (58), Expect = 9.3
 Identities = 10/38 (26%), Positives = 19/38 (50%)
 Frame = +2

Query: 185 LRVSMSLAETSGAATSRSQTTHLRCLCTAFTIQLILGS 298
           + +S+ +  T+G   SR  T  + C C    + L +G+
Sbjct: 330 IAISLPIDNTTGLTASRGYTIRIECYCIDPNVTLTMGT 367


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,641,985
Number of Sequences: 59808
Number of extensions: 372624
Number of successful extensions: 865
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 804
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 865
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1536271375
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)