Bombyx BLAST Result against fruitfly

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120865.seq
         (622 letters)

Database: fruitfly 
           53,049 sequences; 24,988,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p pro...   121   7e-28
AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L1...   121   7e-28
AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA ...    29   3.8  

>AY094841-1|AAM11194.1|  204|Drosophila melanogaster RE01373p
           protein.
          Length = 204

 Score =  121 bits (292), Expect = 7e-28
 Identities = 56/79 (70%), Positives = 60/79 (75%)
 Frame = -2

Query: 492 TYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSH 313
           TYGKPKSHGVNQLKP R LQSIAEE           L+SYW+AQD+SYKYFEVIL+D  H
Sbjct: 80  TYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHH 139

Query: 312 KAIRRDPKINWIVNAVHKH 256
            AIRRDPKINWI   VHKH
Sbjct: 140 SAIRRDPKINWICKHVHKH 158



 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 33/45 (73%), Positives = 39/45 (86%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 160 ELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


>AF030251-1|AAB84223.1|  204|Drosophila melanogaster ribosomal L15
           (YL10) protein homologueprotein.
          Length = 204

 Score =  121 bits (292), Expect = 7e-28
 Identities = 56/79 (70%), Positives = 60/79 (75%)
 Frame = -2

Query: 492 TYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSH 313
           TYGKPKSHGVNQLKP R LQSIAEE           L+SYW+AQD+SYKYFEVIL+D  H
Sbjct: 80  TYGKPKSHGVNQLKPYRGLQSIAEERVGRRLGGLRVLNSYWIAQDASYKYFEVILIDTHH 139

Query: 312 KAIRRDPKINWIVNAVHKH 256
            AIRRDPKINWI   VHKH
Sbjct: 140 SAIRRDPKINWICKHVHKH 158



 Score = 74.5 bits (175), Expect = 1e-13
 Identities = 33/45 (73%), Positives = 39/45 (86%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E+RGLTSAG+SSRG+GKG+RYSQT GGSRRAAW R+N   + RKR
Sbjct: 160 ELRGLTSAGKSSRGIGKGYRYSQTIGGSRRAAWKRKNREHMHRKR 204


>AE014134-808|AAF50957.4| 1286|Drosophila melanogaster CG3047-PA
           protein.
          Length = 1286

 Score = 29.5 bits (63), Expect = 3.8
 Identities = 20/81 (24%), Positives = 30/81 (37%)
 Frame = +2

Query: 98  TVLDRCLSFAT*LKSVASEPSCPA*ASLCLRVSMSLAETSGAATSRSQTTHLRCLCTAFT 277
           T   R  +  T  +   + P C    S C   + +   T+   TSR  TT  RC  T  T
Sbjct: 253 TTTPRSTTTTTTRRPTTTTPRCTTTTSTCAPTTTTPRSTTTTTTSRPTTTTPRCTTTTST 312

Query: 278 IQLILGSRRMALCDGSTRITS 340
                 + R      ++R T+
Sbjct: 313 CSPTRTTPRSTTTTSTSRPTT 333


  Database: fruitfly
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 24,988,368
  Number of sequences in database:  53,049
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 26,659,361
Number of Sequences: 53049
Number of extensions: 532750
Number of successful extensions: 1173
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 1150
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1173
length of database: 24,988,368
effective HSP length: 82
effective length of database: 20,638,350
effective search space used: 2559155400
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)