Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120865.seq
         (622 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal prote...   104   4e-23
U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy ch...    29   2.7  
L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy ch...    29   2.7  
AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical ...    27   8.2  

>U88168-3|AAC24397.1|  204|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 15 protein.
          Length = 204

 Score =  104 bits (250), Expect = 4e-23
 Identities = 49/101 (48%), Positives = 66/101 (65%)
 Frame = -2

Query: 558 YVVLRIRVPTWXPASVHCLRVPTYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLS 379
           +VV R+RV         C +  TYGKPK+HGVN+LK  ++ Q++AE            L+
Sbjct: 59  FVVYRVRVRRGNRKRPVC-KGQTYGKPKTHGVNELKNAKSKQAVAEGRAGRRLGSLRVLN 117

Query: 378 SYWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIVNAVHKH 256
           SYWVA+DS+YK++EV+L+DP HKAIRR+P   WI   VHKH
Sbjct: 118 SYWVAEDSTYKFYEVVLIDPFHKAIRRNPDTQWITKPVHKH 158



 Score = 63.3 bits (147), Expect = 1e-10
 Identities = 29/45 (64%), Positives = 33/45 (73%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGLGKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E RGLTSAGR SRGLGKG R+S T+GGS+   W R+NT    RKR
Sbjct: 160 EQRGLTSAGRKSRGLGKGWRFSATRGGSQAKNWKRKNTKVFHRKR 204


>U80440-1|AAK21472.1| 4568|Caenorhabditis elegans Dynein heavy chain
           protein 1 protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 360 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHL 253
           D  Y  F  +L D + K  R DP K++W V AVHK L
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRL 455


>L33260-1|AAC37251.1| 4568|Caenorhabditis elegans dynein heavy chain
           protein.
          Length = 4568

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 360 DSSYKYFEVILVDPSHKAIRRDP-KINWIVNAVHKHL 253
           D  Y  F  +L D + K  R DP K++W V AVHK L
Sbjct: 420 DDEYDKFIALLRDINKKK-RDDPSKLSWKVTAVHKRL 455


>AF016679-1|AAB66162.1|  539|Caenorhabditis elegans Hypothetical
           protein T28C12.5 protein.
          Length = 539

 Score = 27.5 bits (58), Expect = 8.2
 Identities = 10/19 (52%), Positives = 11/19 (57%)
 Frame = +3

Query: 441 CAWASTG*HHGSWACHKWA 497
           C WA+T  HH    C KWA
Sbjct: 212 CHWATTSNHHIREYCKKWA 230


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,282,548
Number of Sequences: 27780
Number of extensions: 260879
Number of successful extensions: 576
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 559
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 576
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1353389824
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)