Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120865.seq
         (622 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)            99   1e-21
At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)            99   1e-21
At1g36280.1 68414.m04509 adenylosuccinate lyase, putative / aden...    30   1.1  
At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloropl...    28   4.3  

>At4g17390.1 68417.m02606 60S ribosomal protein L15 (RPL15B)
          Length = 204

 Score =   99 bits (238), Expect = 1e-21
 Identities = 42/78 (53%), Positives = 56/78 (71%)
 Frame = -2

Query: 489 YGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHK 310
           YGKP + GV QLK  R+ +S+AEE           ++SYW+ +DS+YKY+E+ILVDP+H 
Sbjct: 81  YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHN 140

Query: 309 AIRRDPKINWIVNAVHKH 256
           A+R DP+INWI N VHKH
Sbjct: 141 AVRNDPRINWICNPVHKH 158



 Score = 48.4 bits (110), Expect = 4e-06
 Identities = 24/46 (52%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E+RGLTS G+ +RGL GKGH   + +  SRRA W + N++ LRR R
Sbjct: 160 ELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSISLRRYR 204


>At4g16720.1 68417.m02526 60S ribosomal protein L15 (RPL15A)
          Length = 204

 Score =   99 bits (238), Expect = 1e-21
 Identities = 42/78 (53%), Positives = 56/78 (71%)
 Frame = -2

Query: 489 YGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXLSSYWVAQDSSYKYFEVILVDPSHK 310
           YGKP + GV QLK  R+ +S+AEE           ++SYW+ +DS+YKY+E+ILVDP+H 
Sbjct: 81  YGKPTNQGVTQLKFQRSKRSVAEERAGRKLGGLRVVNSYWLNEDSTYKYYEIILVDPAHN 140

Query: 309 AIRRDPKINWIVNAVHKH 256
           A+R DP+INWI N VHKH
Sbjct: 141 AVRNDPRINWICNPVHKH 158



 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 25/46 (54%), Positives = 32/46 (69%), Gaps = 1/46 (2%)
 Frame = -1

Query: 253 EMRGLTSAGRSSRGL-GKGHRYSQTKGGSRRAAWLRRNTLQLRRKR 119
           E+RGLTS G+ +RGL GKGH   + +  SRRA W + N+L LRR R
Sbjct: 160 ELRGLTSEGKKNRGLRGKGHNNHKNR-PSRRATWKKNNSLSLRRYR 204


>At1g36280.1 68414.m04509 adenylosuccinate lyase, putative /
           adenylosuccinase, putative similar to SP|P25739
           Adenylosuccinate lyase (EC 4.3.2.2) (Adenylosuccinase)
           {Escherichia coli}; contains Pfam profile PF00206: Lyase
          Length = 527

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 24/94 (25%), Positives = 49/94 (52%)
 Frame = -2

Query: 330 LVDPSHKAIRRDPKINWIVNAVHKHLRCVV*LRLVAAPEVSARDIDTLKQREAHAGQLGS 151
           L++PS K++   P++++ V++ H  L+ +   +L+A    S+RD + +    A +   G 
Sbjct: 23  LLNPS-KSLSHLPRVSFSVSSPHS-LKLMTSTKLIAMASASSRDFE-MSNLTALSPLDG- 78

Query: 150 DATLFNYVANDKHLSKTVSDFPFAYFCMQMESQW 49
                 Y    K L+ ++S+F   YF + +E +W
Sbjct: 79  -----RYWGKVKDLASSMSEFGLIYFRVLVEIKW 107


>At3g11170.1 68416.m01355 omega-3 fatty acid desaturase, chloroplast
           (FAD7) (FADD) identical to omega-3 fatty acid
           desaturase, chloroplast precursor SP:P46310 [Arabidopsis
           thaliana (Mouse-ear cress)]; identical to Pfam profile
           PF00487: Fatty acid desaturase; identical to cDNA
           plastid fatty acid desaturase GI:809491
          Length = 446

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 12/34 (35%), Positives = 19/34 (55%)
 Frame = -2

Query: 375 YWVAQDSSYKYFEVILVDPSHKAIRRDPKINWIV 274
           YW+AQ + +    V+  D  H +   DPK+N +V
Sbjct: 147 YWLAQGTMFWALFVLGHDCGHGSFSNDPKLNSVV 180


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,725,202
Number of Sequences: 28952
Number of extensions: 245927
Number of successful extensions: 580
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 580
length of database: 12,070,560
effective HSP length: 78
effective length of database: 9,812,304
effective search space used: 1255974912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)