Bombyx BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120864.seq
         (559 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.    22   3.7  
DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex det...    21   8.4  
DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex det...    21   8.4  
DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex det...    21   8.4  

>AY921579-1|AAX14899.1|  996|Apis mellifera ephrin receptor protein.
          Length = 996

 Score = 22.2 bits (45), Expect = 3.7
 Identities = 7/17 (41%), Positives = 11/17 (64%)
 Frame = +2

Query: 293 KIYYVVCIQLYVWLTHF 343
           K+YY+ C ++ V   HF
Sbjct: 185 KVYYISCPEISVNFAHF 201


>DQ325124-1|ABD14138.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 452 DFTLNXYKEIKDXKLQFLYLNN*YFYEVPI 363
           ++  N YK++     + LY N  Y  ++PI
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ325123-1|ABD14137.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 452 DFTLNXYKEIKDXKLQFLYLNN*YFYEVPI 363
           ++  N YK++     + LY N  Y  ++PI
Sbjct: 90  NYNNNNYKKLYCNNYKKLYYNINYIEQIPI 119


>DQ325122-1|ABD14136.1|  179|Apis mellifera complementary sex
           determiner protein.
          Length = 179

 Score = 21.0 bits (42), Expect = 8.4
 Identities = 9/30 (30%), Positives = 16/30 (53%)
 Frame = -3

Query: 452 DFTLNXYKEIKDXKLQFLYLNN*YFYEVPI 363
           ++  N YK++     + LY N  Y  ++PI
Sbjct: 90  NYNNNNYKKLYCNNYRKLYYNINYIEQIPI 119


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 136,309
Number of Sequences: 438
Number of extensions: 2555
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)