Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120863.seq
         (318 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple ca...    25   2.1  
SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|c...    25   2.1  
SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3 |Sc...    24   4.8  
SPAC10F6.02c |prp22||ATP-dependent RNA helicase Prp22|Schizosacc...    24   6.4  
SPAC3A11.02 |cps3|mug188|zinc finger protein Cps3|Schizosaccharo...    23   8.5  
SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces ...    23   8.5  
SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces pombe...    23   8.5  
SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyce...    23   8.5  
SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    23   8.5  
SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces...    23   8.5  

>SPBP19A11.07c ||SPBP4H10.02c|human down-regulated in multiple
           cancers-1 homolog 2|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 676

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 7/23 (30%), Positives = 19/23 (82%)
 Frame = +2

Query: 53  NSQLIIHALFLTIKFNNNTNNSY 121
           +++++++ LF+ +K++ +T NSY
Sbjct: 378 SNEMMMNLLFIHVKYSGDTENSY 400


>SPBC32H8.03 |bem46||esterase/lipase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 299

 Score = 25.4 bits (53), Expect = 2.1
 Identities = 9/22 (40%), Positives = 11/22 (50%)
 Frame = -3

Query: 178 DGTNCFSYKMEHPVCETSLITV 113
           D      Y MEHP+C  + I V
Sbjct: 143 DSQTALEYLMEHPICSKTKIVV 164


>SPAC17C9.05c |pmc3|prk1, med27|mediator complex subunit Pmc3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 273

 Score = 24.2 bits (50), Expect = 4.8
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -3

Query: 247 SPVYLKITCSYRESDSRVRPFGSD 176
           SPVYL++    R ++S V+P   D
Sbjct: 235 SPVYLELPSVRRNANSTVKPTSKD 258


>SPAC10F6.02c |prp22||ATP-dependent RNA helicase
           Prp22|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1168

 Score = 23.8 bits (49), Expect = 6.4
 Identities = 10/28 (35%), Positives = 14/28 (50%)
 Frame = +1

Query: 142 DAPFYN*NNSSRQNQKVAHDYQTRDTNK 225
           D P  N NN S      +HD  ++D +K
Sbjct: 79  DIPTDNVNNGSNSVNGASHDLDSKDVDK 106


>SPAC3A11.02 |cps3|mug188|zinc finger protein
           Cps3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 583

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +2

Query: 158 TKTIRPVRTKRSHTTIRLAIRTSDFQINRATVGHTHTHTLPHTRANT 298
           + T+R    KRS ++I +   TS F  ++     ++ HT P    N+
Sbjct: 218 SSTVRSPHAKRSLSSISVKSSTSPFSGSKFLSSSSYPHT-PEAHLNS 263


>SPBC3D6.02 |but2||But2 family protein But2 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 390

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = +2

Query: 188 RSHTTIRLAIRTSDFQINRATVGHTHTHTLPHTRANTXXGFIQ 316
           R + T R    T +    RA  GH+HT+ L     NT   +IQ
Sbjct: 331 RFNCTTRGCEYTQNIPCPRA--GHSHTYELAPASPNTSISWIQ 371


>SPMIT.04 |cox3||cytochrome c oxidase 3|Schizosaccharomyces
           pombe|chr mitochondrial|||Manual
          Length = 273

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 15/64 (23%), Positives = 29/64 (45%)
 Frame = +2

Query: 20  KCVSFSFHLFINSQLIIHALFLTIKFNNNTNNSYE*RFTYRMLHFITKTIRPVRTKRSHT 199
           K +   F LF+ S+  + A      F+++ + ++E    +  +    KTI P+     +T
Sbjct: 87  KGLKIGFMLFLISETFLFASIFWAFFHSSLSPTFELGAVWPPVGIADKTIDPLEVPLLNT 146

Query: 200 TIRL 211
            I L
Sbjct: 147 VILL 150


>SPAC823.12 |||zinc finger protein Pep5/Vps11 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 906

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = +2

Query: 35  SFHLFINSQLIIHALFLTIKFNNN 106
           +F +  +S L+  A  L I+FNNN
Sbjct: 486 AFKICYDSNLLDEAKHLAIRFNNN 509


>SPAC30C2.03 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 210

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = +2

Query: 191 SHTTIRLAIRTSDFQINRATVGHTHTHT 274
           S T IRLAIR+    ++++ V   H  T
Sbjct: 88  SQTPIRLAIRSGKKSVHKSAVVRHHNTT 115


>SPCC4G3.11 |mug154||conserved fungal protein|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 316

 Score = 23.4 bits (48), Expect = 8.5
 Identities = 8/15 (53%), Positives = 11/15 (73%)
 Frame = +1

Query: 4   FYNLFKMCFLFISFI 48
           F +   +CFLFISF+
Sbjct: 89  FLSFLSICFLFISFL 103


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,103,011
Number of Sequences: 5004
Number of extensions: 18335
Number of successful extensions: 50
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 50
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 50
length of database: 2,362,478
effective HSP length: 63
effective length of database: 2,047,226
effective search space used: 85983492
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)