Bombyx BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120863.seq
         (318 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_07_0014 + 27379941-27379974,27381975-27382033,27382561-273827...    27   3.2  
09_02_0267 - 6485428-6485895,6488255-6488303,6488466-6488469,648...    27   3.2  
09_04_0245 + 15995689-15995742,15995979-15996075,15996165-159961...    27   4.2  
10_08_0074 - 14668625-14669797                                         26   7.4  

>11_07_0014 +
           27379941-27379974,27381975-27382033,27382561-27382782,
           27383727-27383810,27385054-27385131,27385716-27385832,
           27385956-27386019,27386399-27386402,27386565-27386613,
           27388973-27389440
          Length = 392

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 179 RTKRSHTTIRLAIRTSDFQINRATVGHTHTH--TLPHT 286
           + KR     RL  R  + +I RA   HT+TH  TLP T
Sbjct: 271 KRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDT 308


>09_02_0267 -
           6485428-6485895,6488255-6488303,6488466-6488469,
           6488849-6488912,6489036-6489152,6489737-6489814,
           6491058-6491141,6492086-6492307,6492835-6492893,
           6494894-6494927
          Length = 392

 Score = 27.1 bits (57), Expect = 3.2
 Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
 Frame = +2

Query: 179 RTKRSHTTIRLAIRTSDFQINRATVGHTHTH--TLPHT 286
           + KR     RL  R  + +I RA   HT+TH  TLP T
Sbjct: 271 KRKRVTAFERLWSRAGELRILRAMASHTNTHRSTLPDT 308


>09_04_0245 + 15995689-15995742,15995979-15996075,15996165-15996185,
            15996442-15996573,15996707-15996834,15996919-15997203,
            15997391-15997521,15999700-15999817,16000609-16000703,
            16001437-16001511,16001860-16001911,16002767-16002859,
            16003625-16003690,16003785-16003867,16003942-16004054,
            16005271-16005410,16005569-16005643,16006084-16006160,
            16006426-16006514,16008039-16008085,16009004-16009138,
            16009298-16009345,16009605-16009667,16009709-16009730,
            16010284-16010458,16014250-16014321,16014887-16014958,
            16015904-16016005,16016197-16016225,16016333-16016403,
            16016549-16016597,16016684-16016784,16017495-16017623,
            16017683-16017752,16017975-16018194,16019368-16019389,
            16019457-16019604,16021569-16021693,16022344-16022774,
            16022984-16023110,16023241-16023292,16023351-16023502
          Length = 1461

 Score = 26.6 bits (56), Expect = 4.2
 Identities = 21/83 (25%), Positives = 34/83 (40%), Gaps = 2/83 (2%)
 Frame = -1

Query: 261  VCPTVALFI*KSLVRIASLIVVCDLLVLTGRIVLVIKWSILYVKRHSXXXXXXXLNFIVK 82
            VC T    +  S + +A     C L      ++  I W I+  K  S       L+F   
Sbjct: 1165 VCATAVDPVTPSSILVAIAASYCFLFPTASSLLTPILWHIMVGKAGSSFYGDYILDFNAN 1224

Query: 81   NKACIIN*LFI--NK*NEKETHF 19
             + C+++  F   N   +KET+F
Sbjct: 1225 CERCVVSLSFYKDNDEEKKETYF 1247


>10_08_0074 - 14668625-14669797
          Length = 390

 Score = 25.8 bits (54), Expect = 7.4
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = +2

Query: 185 KRSHTTIRLAIRTSDFQINRATVGHTHTHTLPHTR 289
           K S TT+ + I   + Q+ RA +   +T +LP T+
Sbjct: 255 KESDTTVVIRIDDMEAQVFRALLFFVYTDSLPETK 289


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,278,862
Number of Sequences: 37544
Number of extensions: 93871
Number of successful extensions: 186
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 182
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 186
length of database: 14,793,348
effective HSP length: 72
effective length of database: 12,090,180
effective search space used: 398975940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)