Bombyx BLAST Result against nematostella

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120863.seq
         (318 letters)

Database: nematostella 
           59,808 sequences; 16,821,457 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)                   27   3.3  
SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)              27   4.4  
SB_37311| Best HMM Match : Lysis_S (HMM E-Value=4.3)                   26   5.8  
SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)                  26   5.8  

>SB_48994| Best HMM Match : ASC (HMM E-Value=1.3e-11)
          Length = 538

 Score = 27.1 bits (57), Expect = 3.3
 Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
 Frame = +2

Query: 47  FINSQLII--HALFLTIKFNNNTNNS 118
           F+N  L +  H L L IK NNN NN+
Sbjct: 459 FVNPNLHVAHHGLGLVIKVNNNNNNN 484


>SB_24811| Best HMM Match : No HMM Matches (HMM E-Value=.)
          Length = 619

 Score = 26.6 bits (56), Expect = 4.4
 Identities = 16/59 (27%), Positives = 30/59 (50%), Gaps = 1/59 (1%)
 Frame = -1

Query: 297 VFARVCGSVCVCVCPTVALFI*KSL-VRIASLIVVCDLLVLTGRIVLVIKWSILYVKRH 124
           +F  VC  + + VCP +++ +   L VR    + VC LL +    +L +++  L   R+
Sbjct: 476 LFIAVCSLLSITVCPLLSITVCPLLSVRYCLSVTVCPLLSVRYCPLLSVRYCPLLSVRY 534


>SB_37311| Best HMM Match : Lysis_S (HMM E-Value=4.3)
          Length = 231

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = +2

Query: 140 RMLHFITKTIRPVRTKRSHTTIRLAIRTSDFQINRATVGHTHT 268
           R  HF++ + R  R + S    R   R  D     A+ G THT
Sbjct: 69  RKRHFVSCSRRWPRGRASRRDARACARADDASAGTASAGITHT 111


>SB_37498| Best HMM Match : MATH (HMM E-Value=1.8e-28)
          Length = 562

 Score = 26.2 bits (55), Expect = 5.8
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = +2

Query: 98  NNNTNNSYE*RFTYRMLHFITKT 166
           NNN NN+ E   T+R + +IT T
Sbjct: 146 NNNNNNNNEFNSTFRSIDWITDT 168


  Database: nematostella
    Posted date:  Oct 22, 2007  1:22 PM
  Number of letters in database: 16,821,457
  Number of sequences in database:  59,808
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,043,954
Number of Sequences: 59808
Number of extensions: 135607
Number of successful extensions: 294
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 278
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 291
length of database: 16,821,457
effective HSP length: 72
effective length of database: 12,515,281
effective search space used: 413004273
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)