Bombyx BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120863.seq
         (318 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical pr...    27   2.2  
AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine r...    26   6.8  
U49940-1|AAA93411.2|  435|Caenorhabditis elegans Hypothetical pr...    22   10.0 

>Z66498-3|CAA91293.2|  687|Caenorhabditis elegans Hypothetical
           protein M195.3 protein.
          Length = 687

 Score = 27.5 bits (58), Expect = 2.2
 Identities = 16/52 (30%), Positives = 25/52 (48%)
 Frame = -3

Query: 247 SPVYLKITCSYRESDSRVRPFGSDGTNCFSYKMEHPVCETSLITVISIIIKF 92
           SP+ L++T    +  + V   G  GTN   Y +E P+   +  TV   I K+
Sbjct: 426 SPLGLRVTDYEEQIGADVIEHGLAGTNVARYVLEKPLSTRTFQTVTKAITKW 477


>AF022976-11|AAC69080.1|  196|Caenorhabditis elegans Serpentine
           receptor, class w protein108 protein.
          Length = 196

 Score = 25.8 bits (54), Expect = 6.8
 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
 Frame = +2

Query: 65  IIHALFLTIKFNNNTNNSYE*RFTYRMLHFITKTIRPVRTKRS------HTTIRLAIRTS 226
           I+HA+ LT     +T+ +     T  +LH + K  +  + K+S      HTT  +   T+
Sbjct: 40  ILHAIILTRSSMKSTSTNVIIVLTILLLHALNKAKKARKKKKSSLRDTDHTTKLVVFMTA 99

Query: 227 DFQINRATVG 256
            F    A +G
Sbjct: 100 AFFFAEAPLG 109


>U49940-1|AAA93411.2|  435|Caenorhabditis elegans Hypothetical
           protein T24D11.1 protein.
          Length = 435

 Score = 22.2 bits (45), Expect(2) = 10.0
 Identities = 9/22 (40%), Positives = 12/22 (54%)
 Frame = +2

Query: 209 LAIRTSDFQINRATVGHTHTHT 274
           L  R S   ++   + HTHTHT
Sbjct: 408 LVARNSRAHVSAKMLIHTHTHT 429



 Score = 21.4 bits (43), Expect(2) = 10.0
 Identities = 7/7 (100%), Positives = 7/7 (100%)
 Frame = +2

Query: 257 HTHTHTL 277
           HTHTHTL
Sbjct: 426 HTHTHTL 432


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 6,110,099
Number of Sequences: 27780
Number of extensions: 104364
Number of successful extensions: 256
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 251
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 256
length of database: 12,740,198
effective HSP length: 71
effective length of database: 10,767,818
effective search space used: 366105812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)