BLASTX 2.2.12 [Aug-07-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= NV120863.seq (318 letters) Database: celegans 27,780 sequences; 12,740,198 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical pr... 27 2.2 AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine r... 26 6.8 U49940-1|AAA93411.2| 435|Caenorhabditis elegans Hypothetical pr... 22 10.0 >Z66498-3|CAA91293.2| 687|Caenorhabditis elegans Hypothetical protein M195.3 protein. Length = 687 Score = 27.5 bits (58), Expect = 2.2 Identities = 16/52 (30%), Positives = 25/52 (48%) Frame = -3 Query: 247 SPVYLKITCSYRESDSRVRPFGSDGTNCFSYKMEHPVCETSLITVISIIIKF 92 SP+ L++T + + V G GTN Y +E P+ + TV I K+ Sbjct: 426 SPLGLRVTDYEEQIGADVIEHGLAGTNVARYVLEKPLSTRTFQTVTKAITKW 477 >AF022976-11|AAC69080.1| 196|Caenorhabditis elegans Serpentine receptor, class w protein108 protein. Length = 196 Score = 25.8 bits (54), Expect = 6.8 Identities = 19/70 (27%), Positives = 32/70 (45%), Gaps = 6/70 (8%) Frame = +2 Query: 65 IIHALFLTIKFNNNTNNSYE*RFTYRMLHFITKTIRPVRTKRS------HTTIRLAIRTS 226 I+HA+ LT +T+ + T +LH + K + + K+S HTT + T+ Sbjct: 40 ILHAIILTRSSMKSTSTNVIIVLTILLLHALNKAKKARKKKKSSLRDTDHTTKLVVFMTA 99 Query: 227 DFQINRATVG 256 F A +G Sbjct: 100 AFFFAEAPLG 109 >U49940-1|AAA93411.2| 435|Caenorhabditis elegans Hypothetical protein T24D11.1 protein. Length = 435 Score = 22.2 bits (45), Expect(2) = 10.0 Identities = 9/22 (40%), Positives = 12/22 (54%) Frame = +2 Query: 209 LAIRTSDFQINRATVGHTHTHT 274 L R S ++ + HTHTHT Sbjct: 408 LVARNSRAHVSAKMLIHTHTHT 429 Score = 21.4 bits (43), Expect(2) = 10.0 Identities = 7/7 (100%), Positives = 7/7 (100%) Frame = +2 Query: 257 HTHTHTL 277 HTHTHTL Sbjct: 426 HTHTHTL 432 Database: celegans Posted date: Oct 23, 2007 1:18 PM Number of letters in database: 12,740,198 Number of sequences in database: 27,780 Lambda K H 0.318 0.134 0.401 Gapped Lambda K H 0.279 0.0580 0.190 Matrix: BLOSUM62 Gap Penalties: Existence: 9, Extension: 2 Number of Hits to DB: 6,110,099 Number of Sequences: 27780 Number of extensions: 104364 Number of successful extensions: 256 Number of sequences better than 10.0: 3 Number of HSP's better than 10.0 without gapping: 251 Number of HSP's successfully gapped in prelim test: 0 Number of HSP's that attempted gapping in prelim test: 0 Number of HSP's gapped (non-prelim): 256 length of database: 12,740,198 effective HSP length: 71 effective length of database: 10,767,818 effective search space used: 366105812 frameshift window, decay const: 40, 0.1 T: 12 A: 40 X1: 16 ( 7.3 bits) X2: 37 (14.9 bits) X3: 62 (25.0 bits) S1: 41 (21.7 bits)
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