Bombyx BLAST Result against arabidopsis

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120863.seq
         (318 letters)

Database: arabidopsis 
           28,952 sequences; 12,070,560 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

At1g31260.1 68414.m03826 metal transporter, putative (ZIP10) ide...    30   0.39 
At3g24200.1 68416.m03037 monooxygenase family protein low simila...    27   2.1  
At3g56120.1 68416.m06237 Met-10+ like family protein non-consens...    26   4.8  
At1g69910.1 68414.m08045 protein kinase family protein contains ...    25   8.3  
At1g22870.1 68414.m02855 protein kinase family protein contains ...    25   8.3  

>At1g31260.1 68414.m03826 metal transporter, putative (ZIP10)
           identical to putative metal transporter ZIP10
           [Arabidopsis thaliana] gi|17385792|gb|AAL38436; similar
           to iron-regulated transporter 2 GB:AAD30549 GI:4836773
           from [Lycopersicon esculentum]; member of the Zinc
           (Zn2+)-Iron (Fe2+) permease (ZIP) family, PMID:11500563
          Length = 364

 Score = 29.9 bits (64), Expect = 0.39
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = +2

Query: 212 AIRTSDFQINRATV-GHTHTHTLPH 283
           ++ T D +I    V GH H+HTLPH
Sbjct: 165 SVETPDQEIGHVQVHGHVHSHTLPH 189


>At3g24200.1 68416.m03037 monooxygenase family protein low
           similarity to VisC [Escherichia coli][GI:216629];
           contains Pfam profile: PF01360 Monooxygenase
          Length = 507

 Score = 27.5 bits (58), Expect = 2.1
 Identities = 14/41 (34%), Positives = 19/41 (46%)
 Frame = -3

Query: 256 SDGSPVYLKITCSYRESDSRVRPFGSDGTNCFSYKMEHPVC 134
           SDG+ VY K+      S SRVR      T  ++Y     +C
Sbjct: 228 SDGNRVYAKLVVGADGSKSRVRELAGIKTTGWNYSQNAIIC 268


>At3g56120.1 68416.m06237 Met-10+ like family protein non-consensus
           TT donor splice site at exon 4 ; contains Pfam profile
           PF02475: Met-10+ like-protein
          Length = 468

 Score = 26.2 bits (55), Expect = 4.8
 Identities = 13/42 (30%), Positives = 19/42 (45%)
 Frame = -3

Query: 238 YLKITCSYRESDSRVRPFGSDGTNCFSYKMEHPVCETSLITV 113
           YLKI   + + D  +     D    FS+ M    CE +L +V
Sbjct: 253 YLKINAKFNKVDDLICVHNMDARKFFSHLMAVSTCEDNLQSV 294


>At1g69910.1 68414.m08045 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 636

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 22/64 (34%), Positives = 30/64 (46%), Gaps = 2/64 (3%)
 Frame = +2

Query: 8   TIYLKCVSFSF--HLFINSQLIIHALFLTIKFNNNTNNSYE*RFTYRMLHFITKTIRPVR 181
           TI +K ++FS   +  I+S L +  +  T   N NTNN    RF+     FI  T  P R
Sbjct: 68  TITIKNLTFSILHYSSISSSLTLSPITNT---NRNTNNCSSLRFSSSPNRFIDLTGSPFR 124

Query: 182 TKRS 193
              S
Sbjct: 125 VSDS 128


>At1g22870.1 68414.m02855 protein kinase family protein contains
           protein kinase domain, Pfam:PF00069
          Length = 913

 Score = 25.4 bits (53), Expect = 8.3
 Identities = 11/36 (30%), Positives = 19/36 (52%)
 Frame = +2

Query: 173 PVRTKRSHTTIRLAIRTSDFQINRATVGHTHTHTLP 280
           PV +  +  T+ L I+ ++  IN+    H  +H LP
Sbjct: 432 PVLSTATGDTLLLLIKRAELIINKTNAEHLVSHVLP 467


  Database: arabidopsis
    Posted date:  Oct 4, 2007 10:56 AM
  Number of letters in database: 12,070,560
  Number of sequences in database:  28,952
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,436,534
Number of Sequences: 28952
Number of extensions: 85898
Number of successful extensions: 152
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 152
length of database: 12,070,560
effective HSP length: 71
effective length of database: 10,014,968
effective search space used: 340508912
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)