Bombyx BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NV120862.seq
         (632 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase Ino80|Schizo...    30   0.24 
SPCC777.13 |vps35||retromer complex subunit Vps35|Schizosaccharo...    27   1.7  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    27   2.3  
SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces pomb...    26   3.9  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   3.9  
SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces p...    26   3.9  
SPAC1486.06 |||nicotinate phosphoribosyltransferase |Schizosacch...    26   5.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    25   6.9  
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc...    25   6.9  
SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase Swr1|Schizo...    25   6.9  
SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   9.1  
SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces...    25   9.1  

>SPAC29B12.01 |ino80|SPAC3G6.12|SNF2 family helicase
           Ino80|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1604

 Score = 30.3 bits (65), Expect = 0.24
 Identities = 24/74 (32%), Positives = 36/74 (48%), Gaps = 2/74 (2%)
 Frame = +1

Query: 25  ERGNFYYNTPPPPLRY--PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSV 198
           +RGN +  +PPPPL Y  P   AT    NA   NNA      TT  N  +   ++ ++ +
Sbjct: 55  QRGNEFQASPPPPLGYVTPEYGATGTPVNA---NNASRVDYATTAANVPEEYANDYSSEL 111

Query: 199 AIAPYNKSKEPTLD 240
           A   +N +  P +D
Sbjct: 112 AYI-HNVNDMPHVD 124


>SPCC777.13 |vps35||retromer complex subunit
           Vps35|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 785

 Score = 27.5 bits (58), Expect = 1.7
 Identities = 11/32 (34%), Positives = 20/32 (62%)
 Frame = +3

Query: 261 NKCVDFVQKIIRYYRCNDMSELSPLMIHFINT 356
           N+C+ F+ +  R ++C D +E   L+  F+NT
Sbjct: 510 NRCI-FLARNFRIFKCMDWAEKVRLLWEFVNT 540


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 13/40 (32%), Positives = 24/40 (60%), Gaps = 1/40 (2%)
 Frame = +2

Query: 428 HDTPPDSVAKRVGTRQRGRVPAERFEYFQ-ASFVLNSLPA 544
           +D+ PD++ +RV  +QR   P + F+  +  + V+NS  A
Sbjct: 160 NDSVPDTIDERVLNKQRNNKPLDNFKCIENNNVVINSAKA 199


>SPBC106.17c |cys2||O-acetyltransferase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 504

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 22/87 (25%), Positives = 33/87 (37%), Gaps = 1/87 (1%)
 Frame = +1

Query: 79  NPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE-PTLDAGESI 255
           +P T +        + P  V     DN M       T        NK      LDA ES 
Sbjct: 418 DPETNLIAGLAPLKDTPVMVMGVESDNLMPVECQRETARCLEKAGNKQVVYHELDANESF 477

Query: 256 GTTNVWILFKKLLDITGAMTCQNLVLS 336
              + +++++K LD+ G    + L LS
Sbjct: 478 YGHDTFLIYRKDLDLVGGKLKKFLELS 504


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 991

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 14/40 (35%), Positives = 16/40 (40%)
 Frame = +1

Query: 4    HEKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNN 123
            HE      RG  Y N PP    Y SN         ++YNN
Sbjct: 945  HEGYGGRSRGGGYSNGPPAGNHYSSNRGKGYGYQRESYNN 984


>SPBC17D1.01 ||SPBC17D11.09|sequence orphan|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 584

 Score = 26.2 bits (55), Expect = 3.9
 Identities = 15/48 (31%), Positives = 25/48 (52%)
 Frame = +1

Query: 58  PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVA 201
           PP+  P+  +    TN+   ++A G+ PP     K++  RS+S N  A
Sbjct: 536 PPIVKPNLMSEPTPTNSDEKSHALGFPPPP--GQKIEFQRSSSKNGTA 581


>SPAC1486.06 |||nicotinate phosphoribosyltransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 410

 Score = 25.8 bits (54), Expect = 5.2
 Identities = 12/46 (26%), Positives = 23/46 (50%)
 Frame = +1

Query: 175 RSNSTNSVAIAPYNKSKEPTLDAGESIGTTNVWILFKKLLDITGAM 312
           R   T  + +    K++E     G  +GT+NV+   K  L+++G +
Sbjct: 176 RDPHTQEIVLQGLMKAQEDFKGPGSFLGTSNVYFAAKYNLNVSGTV 221


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
          pombe|chr 1|||Manual
          Length = 604

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 10/22 (45%), Positives = 12/22 (54%)
 Frame = +1

Query: 4  HEKSMTDERGNFYYNTPPPPLR 69
          HE S+T    +   N PPPP R
Sbjct: 33 HESSLTSSTHSHPSNPPPPPTR 54


>SPAC1F8.03c |str3||siderophore-iron transporter Str3
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 630

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 11/28 (39%), Positives = 14/28 (50%)
 Frame = +3

Query: 144 YDARQQNGHEPQQQHKLGSDRTVQQEQR 227
           Y   QQN  E  Q HK   D+   QE++
Sbjct: 600 YLGNQQNAVEGDQDHKKKGDKETTQEEK 627


>SPAC11E3.01c |swr1|SPAC2H10.03c|SNF2 family helicase
           Swr1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1288

 Score = 25.4 bits (53), Expect = 6.9
 Identities = 16/73 (21%), Positives = 29/73 (39%)
 Frame = +1

Query: 1   RHEKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRS 180
           RH  +   ++G F    P    + PS+    I       ++  GY      D K+  SRS
Sbjct: 84  RHRINEFRKKGYFTAEAPVELKKAPSSNNIPISYRDNLLSHVNGYARSMHNDRKVRASRS 143

Query: 181 NSTNSVAIAPYNK 219
              + + +A + +
Sbjct: 144 RRISGMILAHFKR 156


>SPAC1F5.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 151

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 13/44 (29%), Positives = 20/44 (45%)
 Frame = +1

Query: 55  PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 186
           PP    P++P +   +NA   N    Y+P   R     TS ++S
Sbjct: 54  PPVNTGPTSPVSINASNAAPSNLKASYIPANPRRLSSSTSSASS 97


>SPAP32A8.03c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 513

 Score = 25.0 bits (52), Expect = 9.1
 Identities = 18/63 (28%), Positives = 27/63 (42%)
 Frame = +1

Query: 73  PSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGES 252
           P+   T  + N    N  P Y   T  + +  TS   S++S    P  +  +PT  +GES
Sbjct: 199 PAEHMTGAYVNTPL-NQPPSYAASTQPEFQQTTSPIFSSSSTPPPPPPRPSQPT--SGES 255

Query: 253 IGT 261
             T
Sbjct: 256 QNT 258


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,602
Number of Sequences: 5004
Number of extensions: 49192
Number of successful extensions: 209
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 193
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 207
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 281707720
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)