Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120862.seq
(632 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,287... 32 0.44
01_05_0653 - 23948911-23948937,23949031-23949141,23949361-239494... 31 0.58
01_05_0652 - 23934604-23934636,23934783-23934893,23935000-239351... 31 0.58
03_02_0594 - 9695616-9696042,9696646-9697260,9697410-9697717,970... 31 0.76
07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961 31 1.0
04_04_1393 - 33204699-33204806,33204927-33205164,33205581-332058... 30 1.3
08_02_0644 - 19658270-19658626,19659142-19659218,19659256-196594... 30 1.8
01_01_0489 + 3608720-3608811,3609326-3609431,3609518-3609581,360... 30 1.8
05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023 29 3.1
05_03_0069 + 8004235-8004350,8004927-8005215,8005314-8005375,800... 29 3.1
05_01_0251 + 1901709-1901864,1901968-1901999,1902534-1902664,190... 29 3.1
12_01_0249 + 1850443-1851030 29 4.1
02_04_0005 - 18843061-18843201,18843309-18843440,18844457-188453... 29 4.1
12_01_1068 - 11052769-11052943,11053103-11053182,11053304-110534... 28 5.4
08_02_0220 + 14418092-14418538 28 5.4
02_04_0114 + 19879468-19880671,19882007-19882179,19882265-198826... 28 5.4
08_02_1579 + 27997714-27998199,27998718-27998789,27999073-279991... 28 7.1
12_01_0035 - 295988-296408,296645-296813,296929-296965,297097-29... 27 9.4
09_04_0623 - 19038777-19040561 27 9.4
09_04_0151 - 15154063-15154296,15155616-15155660,15155749-151558... 27 9.4
06_03_0189 - 17697779-17698939 27 9.4
06_01_0501 - 3587390-3587528,3587922-3588031,3588122-3588187,358... 27 9.4
02_04_0266 - 21415912-21418563 27 9.4
>05_01_0367 - 2874429-2874483,2876274-2876345,2876453-2879613,
2879715-2879973,2880060-2880346,2880423-2880758,
2880862-2881003,2881077-2881297,2881379-2881540,
2881617-2881775,2881860-2882159,2882834-2883097,
2883133-2883243,2883902-2883988
Length = 1871
Score = 31.9 bits (69), Expect = 0.44
Identities = 20/66 (30%), Positives = 33/66 (50%), Gaps = 2/66 (3%)
Frame = +1
Query: 43 YNTPPPPLRY-PSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 216
YN P Y P++P+ + + + +Y+ +P Y P + N TS S S S + +P +
Sbjct: 1697 YNPTSPSYSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTS 1756
Query: 217 KSKEPT 234
S PT
Sbjct: 1757 PSYSPT 1762
Score = 28.7 bits (61), Expect = 4.1
Identities = 18/66 (27%), Positives = 31/66 (46%), Gaps = 1/66 (1%)
Frame = +1
Query: 40 YYNTPPPPLRYPSNPATAIFTNAQTYN-NAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYN 216
Y +P P P++P+ + + +Y+ +P Y T + TS S S S + +P +
Sbjct: 1704 YSYSPTSPSYSPTSPSYSYSPTSPSYSPTSPSYNYSPTSPSYSPTSPSYSPTSPSYSPTS 1763
Query: 217 KSKEPT 234
S PT
Sbjct: 1764 PSYSPT 1769
>01_05_0653 -
23948911-23948937,23949031-23949141,23949361-23949441,
23949865-23949984,23950088-23950252,23950344-23950493,
23950565-23950674,23951401-23951518,23951597-23951827,
23952345-23952524,23953639-23953908,23954930-23954979,
23955213-23955288,23955396-23955483,23956010-23956101,
23956200-23956529,23957484-23957593,23957810-23957907,
23959538-23959566
Length = 811
Score = 31.5 bits (68), Expect = 0.58
Identities = 15/37 (40%), Positives = 20/37 (54%)
Frame = +3
Query: 93 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSD 203
H HQ+ +QQ RAA +QQ + QQQ +L D
Sbjct: 100 HQHQQIQMQQMLLQRAAQQQQQQQQQQQQQQQQLHRD 136
>01_05_0652 -
23934604-23934636,23934783-23934893,23935000-23935188,
23935893-23936012,23936109-23936273,23936638-23936790,
23936867-23936976,23937280-23937397,23938197-23938427,
23938984-23939175,23939661-23939945,23940637-23940686,
23940846-23940921,23941048-23941135,23941689-23941771,
23941883-23942248,23942462-23942476,23942909-23943018,
23943134-23943231,23943961-23944019
Length = 883
Score = 31.5 bits (68), Expect = 0.58
Identities = 16/44 (36%), Positives = 22/44 (50%)
Frame = +3
Query: 102 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTD 233
Q +QQ RAA +QQ + QQQ + + QQ+QR D
Sbjct: 120 QHIQMQQMLLQRAAQQQQQQQQQQQQQQQQQQQQQQQQQQQRRD 163
>03_02_0594 -
9695616-9696042,9696646-9697260,9697410-9697717,
9700145-9700235,9700698-9700759,9701256-9702962,
9703789-9703870,9703972-9704057,9704855-9704968,
9705113-9705163,9705261-9705358,9707084-9707546
Length = 1367
Score = 31.1 bits (67), Expect = 0.76
Identities = 16/60 (26%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +3
Query: 246 RIYWYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNV-VKRFESE 422
R WY +C+D Q+ +R RC+D + P + + ++ C ++ + V RF +E
Sbjct: 470 RAGWYRECLDLFQEFVR-VRCSDGDGVGPNGV-TVTSVLHACAQLKVVDFGIGVHRFAAE 527
>07_03_1022 - 23353054-23353263,23353399-23353505,23354613-23354961
Length = 221
Score = 30.7 bits (66), Expect = 1.0
Identities = 14/40 (35%), Positives = 22/40 (55%)
Frame = +1
Query: 52 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDT 171
PPPP P +P A+F +A+ +P P+TR ++ T
Sbjct: 5 PPPPSAPPPSPPRAVFPSARCCLPSPHRFLPSTRRKRLVT 44
>04_04_1393 -
33204699-33204806,33204927-33205164,33205581-33205825,
33206229-33206339,33206645-33206743,33207684-33207731,
33207882-33207999,33208085-33208115,33208700-33208806,
33209644-33209725,33210010-33210104,33210579-33210664,
33211074-33211195,33211613-33211824,33212362-33212510,
33212755-33212982
Length = 692
Score = 30.3 bits (65), Expect = 1.3
Identities = 19/57 (33%), Positives = 31/57 (54%)
Frame = +3
Query: 198 SDRTVQQEQRTDARRRRIYWYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDM 368
SD + D R+ + Y V FV KII Y+ N+++++S L HFI+ + D+
Sbjct: 572 SDSNTFRYDLVDLTRQTLAKYANQV-FV-KIIESYKSNNVNQVSNLCQHFIDLVNDL 626
>08_02_0644 -
19658270-19658626,19659142-19659218,19659256-19659430,
19659543-19659596,19659691-19659858,19660756-19660953,
19661546-19661632,19661739-19661827,19662499-19662955
Length = 553
Score = 29.9 bits (64), Expect = 1.8
Identities = 22/72 (30%), Positives = 33/72 (45%), Gaps = 3/72 (4%)
Frame = +3
Query: 42 LQHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 221
L P AAA SL + R R+++ AR++ + + + G D +V +E
Sbjct: 7 LSFPVAAASKSLSFPAAAQSNKGTPAARKRIKSGGGAREKKENSGGAREEQGKDDSVGEE 66
Query: 222 Q---RTDARRRR 248
Q R D RRRR
Sbjct: 67 QVQRRRDGRRRR 78
>01_01_0489 +
3608720-3608811,3609326-3609431,3609518-3609581,
3609905-3609965,3610017-3610144,3610236-3610385,
3610537-3610791,3611060-3611265,3611469-3611696,
3612161-3612259
Length = 462
Score = 29.9 bits (64), Expect = 1.8
Identities = 18/66 (27%), Positives = 34/66 (51%)
Frame = -1
Query: 485 LGRVALSQLFLQPNQVAYHGLLRFKPLYHVYVDRVRVDAHVTNSVYKMNHERTKF*HVIA 306
+GR+ P+ A GLLR P++ V++D VRV + +Y++ + K+ ++
Sbjct: 247 VGRLVKGSSKPHPSLPARGGLLRTAPVHEVHLDLVRVS---SGKIYRLRNPSRKYLASLS 303
Query: 305 PVISNN 288
S+N
Sbjct: 304 SYDSSN 309
>05_05_0382 + 24547680-24548760,24548887-24549033,24549389-24550023
Length = 620
Score = 29.1 bits (62), Expect = 3.1
Identities = 19/62 (30%), Positives = 26/62 (41%)
Frame = +3
Query: 42 LQHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 221
L SA A V+L S H H RA A + +N P G+DR+ + E
Sbjct: 540 LPRRSACASVALKSSGCHHHVRAGAAAAAHGSVRTSRQSRNNAPPMAPTIRGADRSSEGE 599
Query: 222 QR 227
+R
Sbjct: 600 RR 601
>05_03_0069 +
8004235-8004350,8004927-8005215,8005314-8005375,
8005516-8005602,8005667-8005723,8005940-8006004,
8006292-8006320
Length = 234
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 55 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 234
PPP + NP+T I + + P P + +K T +++ST AI S E T
Sbjct: 146 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTRKRAIDFTKDSIEET 202
>05_01_0251 +
1901709-1901864,1901968-1901999,1902534-1902664,
1902740-1902821,1902928-1903054,1903369-1903686,
1903785-1903846,1903988-1904074,1904139-1904195,
1906113-1906197,1906916-1907185,1908158-1908254,
1908390-1908436,1908826-1908939,1909024-1909117,
1909360-1909457,1910356-1910455,1911445-1911521,
1911824-1913122
Length = 1110
Score = 29.1 bits (62), Expect = 3.1
Identities = 18/60 (30%), Positives = 27/60 (45%)
Frame = +1
Query: 55 PPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPT 234
PPP + NP+T I + + P P + +K T +++ST AI S E T
Sbjct: 293 PPPAPHTDNPSTTIHNTGASSKSTP---PEISLADKTPTEKTSSTTKRAIDFTKDSIEET 349
>12_01_0249 + 1850443-1851030
Length = 195
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = -3
Query: 552 CAYAGSEFSTNDA*KYSNRSAGTRPRCLVPTLFATESGG 436
C++ + S++ A S+ SA T PR ++PT A S G
Sbjct: 35 CSFGSTTSSSSLAASSSDDSAATTPRSVLPTSAAASSSG 73
>02_04_0005 -
18843061-18843201,18843309-18843440,18844457-18845315,
18845884-18845973,18846748-18846869,18846950-18847049,
18847151-18847205,18847275-18847365,18847453-18847572,
18847681-18847780,18847890-18848018,18848099-18848201,
18848670-18848743,18848848-18848933,18849297-18849358,
18849454-18849541,18849937-18850029
Length = 814
Score = 28.7 bits (61), Expect = 4.1
Identities = 15/49 (30%), Positives = 22/49 (44%)
Frame = +1
Query: 28 RGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTS 174
+G+ Y PPPP P A+F + Y PPT R+ ++ S
Sbjct: 665 KGSTCYPPPPPPSSTPPVEPVAVFPPPPSPACGVYYPPPTVREPVINRS 713
>12_01_1068 -
11052769-11052943,11053103-11053182,11053304-11053401,
11053487-11053627,11053701-11053841,11053933-11054017,
11055296-11055826,11055926-11055940
Length = 421
Score = 28.3 bits (60), Expect = 5.4
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 2/72 (2%)
Frame = +1
Query: 43 YNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPY--N 216
++ PPP Y + A ++++ +Y PP D + +S S +VA AP
Sbjct: 77 WDPPPPSSPYSAGHAADEYSSSSSYRRRGASAPP-AEDVVVSSSYSRPAAAVASAPQACT 135
Query: 217 KSKEPTLDAGES 252
S P L A E+
Sbjct: 136 VSSAPPLRAVET 147
>08_02_0220 + 14418092-14418538
Length = 148
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/36 (36%), Positives = 18/36 (50%)
Frame = +1
Query: 463 WDKATRPSPCRAIRIFSGIVCAKFAAGVRAKILQRW 570
WD R S R R+ I+CA+ A G + +RW
Sbjct: 106 WDDDARRSESRVKRVMRRILCAETARGEGEIMRRRW 141
>02_04_0114 +
19879468-19880671,19882007-19882179,19882265-19882605,
19882698-19882977,19883070-19883267,19883380-19883652
Length = 822
Score = 28.3 bits (60), Expect = 5.4
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = +3
Query: 519 RLC*IRCRRTRKNFTTVGADMLGKDALGRG 608
R+ I CRRT+ + VGA +GK A+ G
Sbjct: 207 RVVCILCRRTKNSAVLVGAPGVGKTAIAEG 236
>08_02_1579 +
27997714-27998199,27998718-27998789,27999073-27999120,
27999203-27999357,27999477-27999671,27999743-27999854,
27999955-28000024,28000110-28000168,28000251-28000374,
28000465-28000535,28001053-28001154,28001242-28001322,
28001504-28001662,28001757-28001807
Length = 594
Score = 27.9 bits (59), Expect = 7.1
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 284 LNKIHTFVVPIDSPASSVGSLLLLYGAIATE 192
L++ + P+D+P S G + +LYG +A E
Sbjct: 395 LSEGQQIIRPLDNPIKSTGHIQILYGNLAPE 425
>12_01_0035 -
295988-296408,296645-296813,296929-296965,297097-297173,
297391-297631
Length = 314
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/40 (30%), Positives = 21/40 (52%)
Frame = +1
Query: 118 NNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTL 237
NN TT + + S+ +++S ++ PY +SK P L
Sbjct: 20 NNDGSSTSSTTEEEESGESQRRTSSSSSVRPYIRSKNPRL 59
>09_04_0623 - 19038777-19040561
Length = 594
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/41 (29%), Positives = 21/41 (51%), Gaps = 2/41 (4%)
Frame = +3
Query: 168 HEPQQQHKLGSDRTVQQEQRTDARRR--RIYWYNKCVDFVQ 284
H P+ +HK + Q + D RRR R+ + +C+D +
Sbjct: 134 HGPRDEHKEEEEEGDDQTESEDGRRRRPRLRFKRRCIDHAE 174
>09_04_0151 -
15154063-15154296,15155616-15155660,15155749-15155820,
15155932-15156024,15156282-15156351,15156716-15156912,
15156946-15157215,15158620-15158757,15158841-15158930,
15159041-15159247,15159987-15160154,15160300-15160503,
15160584-15160670,15160748-15160861,15161689-15161835,
15161914-15162063,15162211-15162276,15162376-15162480,
15162625-15162798,15162930-15163154,15163534-15163590,
15163858-15164019,15164234-15164302,15164391-15164471,
15164823-15164925,15165011-15165156,15165285-15165359,
15165441-15165508,15165586-15165667,15165745-15165858,
15166358-15166476,15166692-15166781,15166862-15166988
Length = 1382
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/35 (34%), Positives = 20/35 (57%)
Frame = +3
Query: 117 QQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQE 221
QQ+A Y+ QQN Q+Q K+ +++ +QE
Sbjct: 588 QQKASFHEKYEELQQNALVAQEQAKIANEKLSKQE 622
>06_03_0189 - 17697779-17698939
Length = 386
Score = 27.5 bits (58), Expect = 9.4
Identities = 12/32 (37%), Positives = 17/32 (53%)
Frame = +1
Query: 52 PPPPLRYPSNPATAIFTNAQTYNNAPGYVPPT 147
PPPPL ++ + A A T + +PG P T
Sbjct: 293 PPPPLPSAADKSPATAAEAATASQSPGLSPTT 324
>06_01_0501 -
3587390-3587528,3587922-3588031,3588122-3588187,
3588293-3588410,3588499-3588554,3588647-3588766,
3588937-3589035,3589443-3589490,3589534-3589545,
3590353-3590418,3591412-3591471,3592061-3592162,
3592405-3592426,3592959-3593041,3593166-3593293,
3593775-3593881,3594376-3594845
Length = 601
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/34 (38%), Positives = 20/34 (58%)
Frame = +3
Query: 330 PLMIHFINTIRDMCIDTNPINVNVVKRFESEETM 431
P I +++TIR MC+ +P NV R E++M
Sbjct: 237 PCFILWMSTIRTMCLSNHPGLDNVCTRKPCEQSM 270
>02_04_0266 - 21415912-21418563
Length = 883
Score = 27.5 bits (58), Expect = 9.4
Identities = 13/51 (25%), Positives = 25/51 (49%)
Frame = -2
Query: 610 PPRPKASLPNISAPTVVKFLRVRRQRI*HKRCLKIFESLGRDSAALPCPNS 458
PP P +P +S V+ ++ R ++R + F+ + +PCP+S
Sbjct: 631 PPLPVNDMPPVSVDGVLYWMSEPRLGQSYERAIVSFDIAAKIFEVIPCPSS 681
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,767,424
Number of Sequences: 37544
Number of extensions: 357270
Number of successful extensions: 1557
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 1431
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1541
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1549385732
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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