Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= NV120862.seq
(632 letters)
Database: nematostella
59,808 sequences; 16,821,457 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SB_16838| Best HMM Match : TolA (HMM E-Value=2) 31 1.0
SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06) 30 1.4
SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 30 1.8
SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054) 30 1.8
SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 2.4
SB_41351| Best HMM Match : No HMM Matches (HMM E-Value=.) 29 3.1
SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12) 29 3.1
SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1) 29 3.1
SB_39538| Best HMM Match : VWA (HMM E-Value=0) 29 4.1
SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34) 29 4.1
SB_29515| Best HMM Match : TolA (HMM E-Value=0.031) 29 4.1
SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09) 28 5.5
SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16) 28 5.5
SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06) 28 5.5
SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_34336| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_32984| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27) 28 5.5
SB_21933| Best HMM Match : RVT_1 (HMM E-Value=9.1e-27) 28 5.5
SB_20467| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_1807| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_54014| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_49367| Best HMM Match : AAA (HMM E-Value=0) 28 5.5
SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26) 28 5.5
SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 5.5
SB_10464| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 5.5
SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.) 28 5.5
SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022) 28 7.2
SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 28 7.2
SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0) 28 7.2
SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28) 28 7.2
SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8) 28 7.2
SB_6122| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-26) 28 7.2
SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17) 27 9.6
SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17) 27 9.6
SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048) 27 9.6
SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.) 27 9.6
SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6) 27 9.6
>SB_16838| Best HMM Match : TolA (HMM E-Value=2)
Length = 371
Score = 30.7 bits (66), Expect = 1.0
Identities = 19/57 (33%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Frame = +3
Query: 81 SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQ-HKLGSDRTVQQEQRTDARRRR 248
S N + Q+ QQ+ R YD +QQ + QQQ + + QQEQ+ ++RR
Sbjct: 32 SNNVQLQQQKRQQQQKRTYN-YDIQQQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRR 87
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = +3
Query: 117 QQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRR 248
QQ+ R + +QQ QQ+ KL + QQ+Q+ ++RR
Sbjct: 56 QQQKRQQQQQKRQQQKQKRQQQEQKLQQQQRRQQQQKRQPQQRR 99
>SB_13884| Best HMM Match : LRR_1 (HMM E-Value=6.3e-06)
Length = 575
Score = 30.3 bits (65), Expect = 1.4
Identities = 19/60 (31%), Positives = 30/60 (50%), Gaps = 1/60 (1%)
Frame = +1
Query: 7 EKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRD-NKMDTSRSN 183
E + +ERG ++ +PS P TA FTN + V P +R+ N++ SRS+
Sbjct: 506 EARVPEERGYGHFIKTRTGDPHPSYPLTASFTNYPLLSTLDPLVAPLSRELNQLPASRSH 565
>SB_47272| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 737
Score = 29.9 bits (64), Expect = 1.8
Identities = 19/60 (31%), Positives = 32/60 (53%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAESLPSDSNIFRHRLC*IRCRRTRK 554
DT+ +VN V +FES++ I++ R K+ GQG ++ ++ LC R + RK
Sbjct: 430 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDNC-GYQHMANQELCPARGKDCRK 486
>SB_21715| Best HMM Match : Serglycin (HMM E-Value=0.054)
Length = 1079
Score = 29.9 bits (64), Expect = 1.8
Identities = 15/54 (27%), Positives = 26/54 (48%), Gaps = 1/54 (1%)
Frame = +3
Query: 93 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSD-RTVQQEQRTDARRRRI 251
H H R+ +R R + A+ GH ++ K +D T+++ DAR+ I
Sbjct: 651 HHHHRSKKDRRHRNTKTHHAKHLKGHSARKHRKENNDAETLEEAVEKDARKNDI 704
>SB_48630| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 228
Score = 29.5 bits (63), Expect = 2.4
Identities = 10/23 (43%), Positives = 15/23 (65%)
Frame = +1
Query: 43 YNTPPPPLRYPSNPATAIFTNAQ 111
YNT PPPL +P++P ++ Q
Sbjct: 58 YNTYPPPLSHPNDPTRGFYSPVQ 80
>SB_25956| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1146
Score = 29.5 bits (63), Expect = 2.4
Identities = 16/48 (33%), Positives = 24/48 (50%)
Frame = +3
Query: 102 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRR 245
Q QQ + +D +QQ H+ QQQH QQ+QR D +++
Sbjct: 1078 QHDQQQQNTGQQQQHDKQQQ--HDQQQQHDQQQQHDQQQQQRHDQQQQ 1123
Score = 28.3 bits (60), Expect = 5.5
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 1/69 (1%)
Frame = +3
Query: 45 QHPSAAAEVSL*SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQH-KLGSDRTVQQE 221
QHPS E H Q+ N Q+ + QQ H+ QQQH + R QQ+
Sbjct: 1064 QHPSEQ-ETDHEQPAQHDQQQQNTGQQQQHDKQQQHDQQQQHDQQQQHDQQQQQRHDQQQ 1122
Query: 222 QRTDARRRR 248
Q D ++++
Sbjct: 1123 QHHDQQQQQ 1131
>SB_41351| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 120
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 177 QQQHKLGSDRTVQQEQRTDARRRRIYWYNKCV--DFVQKIIRYYRCNDMSE 323
QQ H+L D VQ+ Q+ R + Y ++C D + +Y C+D E
Sbjct: 50 QQTHELPCDDAVQEAQQEARREKNEYLKSRCAESDDQDESEKYEYCDDEEE 100
>SB_16515| Best HMM Match : Extensin_2 (HMM E-Value=0.12)
Length = 917
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/48 (33%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Frame = +1
Query: 55 PPPLRYPSN-PATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNS 195
PP R+PS P+ NA + +N P Y P D+ D S + +S
Sbjct: 550 PPEYRFPSEEPSPYAEENAISRSNPPVYTPKEEDDDDDDDEESETEDS 597
>SB_15073| Best HMM Match : MED7 (HMM E-Value=2.1)
Length = 644
Score = 29.1 bits (62), Expect = 3.1
Identities = 16/51 (31%), Positives = 25/51 (49%), Gaps = 2/51 (3%)
Frame = +3
Query: 177 QQQHKLGSDRTVQQEQRTDARRRRIYWYNKCV--DFVQKIIRYYRCNDMSE 323
QQ H+L D VQ+ Q+ R + Y ++C D + +Y C+D E
Sbjct: 574 QQTHELPCDDAVQEAQQEARREKNEYLKSRCAESDDQDESEKYEYCDDEEE 624
>SB_39538| Best HMM Match : VWA (HMM E-Value=0)
Length = 3208
Score = 28.7 bits (61), Expect = 4.1
Identities = 13/54 (24%), Positives = 29/54 (53%)
Frame = +3
Query: 81 SGNGHIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARR 242
S N H+ R ++++R+R +A + +P+++ +L R + ++T RR
Sbjct: 3012 SRNDHVQSRFGAREKSRIRRGIEAILRGRTKPRRRRRLNKSRR-RTHKKTTLRR 3064
>SB_38320| Best HMM Match : SSDP (HMM E-Value=0.34)
Length = 273
Score = 28.7 bits (61), Expect = 4.1
Identities = 14/50 (28%), Positives = 25/50 (50%)
Frame = +3
Query: 102 QRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRRI 251
Q+ QQ+ + + +QQ + QQQ + + Q +QRTD ++ I
Sbjct: 31 QQQQKQQQQQQQQQQKQQQQKQQQQQQQQQQQQQQQQQHQQRTDKKQTEI 80
>SB_29515| Best HMM Match : TolA (HMM E-Value=0.031)
Length = 592
Score = 28.7 bits (61), Expect = 4.1
Identities = 17/65 (26%), Positives = 33/65 (50%)
Frame = +1
Query: 7 EKSMTDERGNFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNS 186
EK + E+ + +P P +R S I+T + T + Y + R +++ TS+ +S
Sbjct: 211 EKIESSEKFSEKSESPEPSVRVDSETGDEIYTVSATPSETESYATTSMR-SRVSTSKGSS 269
Query: 187 TNSVA 201
+ SV+
Sbjct: 270 SPSVS 274
>SB_59142| Best HMM Match : RVT_1 (HMM E-Value=2.5e-09)
Length = 772
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_52004| Best HMM Match : rve (HMM E-Value=1.2e-16)
Length = 869
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_43735| Best HMM Match : PHD (HMM E-Value=5.6e-06)
Length = 772
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_41742| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1061
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_39020| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 319
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 126 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 161
>SB_34336| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 374
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_32984| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 361
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_28158| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 256
Score = 28.3 bits (60), Expect = 5.5
Identities = 17/67 (25%), Positives = 32/67 (47%), Gaps = 1/67 (1%)
Frame = +1
Query: 73 PSNPATAIFTNA-QTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKEPTLDAGE 249
P++ T F N+ + N + P + RDN +DTS ++ + + NK++ + GE
Sbjct: 132 PNDNNTLSFDNSFNPFRNKSTWTPSSGRDNSLDTSPNSVKLQIQNSTLNKTRS-NITPGE 190
Query: 250 SIGTTNV 270
T +
Sbjct: 191 RNALTQL 197
>SB_26129| Best HMM Match : RVT_1 (HMM E-Value=1.2e-27)
Length = 1036
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_21933| Best HMM Match : RVT_1 (HMM E-Value=9.1e-27)
Length = 510
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_20467| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 317
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_6246| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 135
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/84 (21%), Positives = 44/84 (52%), Gaps = 3/84 (3%)
Frame = +3
Query: 171 EPQQQHKLGSDRTVQQEQRTDARRRRIYWYNKCVDFVQKIIRYYRCN-DMSELSPLMI-- 341
E +HK+ ++ +++ + D RRRI N ++ ++K + R + +++L L++
Sbjct: 48 EESSKHKITAEARLRRLRANDRERRRIQSINVALEALRKAVPNTRSSGKLTKLDTLLLAR 107
Query: 342 HFINTIRDMCIDTNPINVNVVKRF 413
+I + ++ T N++ K+F
Sbjct: 108 DYIKHLNEILQRTRDENLDRNKKF 131
>SB_3510| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 272
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_1807| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 281
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_54014| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 176
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_51857| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 438
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_49367| Best HMM Match : AAA (HMM E-Value=0)
Length = 976
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_45059| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 519
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_41413| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 471
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 160 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 195
>SB_27583| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 515
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_25888| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 606
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_22859| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1108
Score = 28.3 bits (60), Expect = 5.5
Identities = 18/73 (24%), Positives = 28/73 (38%), Gaps = 1/73 (1%)
Frame = +3
Query: 249 IYWYNKCVDFVQKIIRYYRCNDMSELSPLMIHFINTIRDMCIDTNPINVNVVKRFESE-E 425
I W CV V DM LSP ++ + C + + ++RF E
Sbjct: 896 IEWLEMCVVHVSTFTAELSITDMHSLSPSVLKVAKYAYEHCQQSEVLYGTFLQRFSEELS 955
Query: 426 TMIRHLIRLQKEL 464
+ + +LQK L
Sbjct: 956 AIFKKAYQLQKAL 968
>SB_19509| Best HMM Match : rve (HMM E-Value=5.4e-26)
Length = 1195
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 130 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 165
>SB_16379| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 499
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 77 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 112
>SB_11418| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 292
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 80 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 115
>SB_10464| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 476
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 10 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 45
>SB_7494| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 960
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_4571| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 737
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 635 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 670
>SB_3197| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 652
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_24| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1246
Score = 28.3 bits (60), Expect = 5.5
Identities = 14/38 (36%), Positives = 24/38 (63%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ +VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_56618| Best HMM Match : DUF1213 (HMM E-Value=0.022)
Length = 1421
Score = 27.9 bits (59), Expect = 7.2
Identities = 12/52 (23%), Positives = 25/52 (48%)
Frame = +3
Query: 93 HIHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRR 248
H QR ++ + A +QQ + QQQ + + QQ+Q+ ++++
Sbjct: 112 HDDQRTEYDEKTNILAPQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQQ 163
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/47 (25%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = +1
Query: 31 GNFYYNTPPPPLRYPSNPATAIF-TNAQTYNNAPGYVPPTTRDNKMD 168
G + PPP L++ N + A+F ++ N++ + P ++R D
Sbjct: 268 GRYQRKGPPPRLKFSRNSSPALFPASSMCENSSLSFYPASSRGGSPD 314
>SB_33431| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 377
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETGVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_7831| Best HMM Match : RNA_pol_Rpb1_7 (HMM E-Value=0)
Length = 1467
Score = 27.9 bits (59), Expect = 7.2
Identities = 17/62 (27%), Positives = 29/62 (46%)
Frame = +1
Query: 49 TPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNKSKE 228
+P P PS+P+ + + + + +PGY P + S S S S + +P + S
Sbjct: 413 SPSSPAFMPSSPSMSPASPSYS-PTSPGYSPSSPSSGYSPASPSYSPTSPSYSPTSPSYS 471
Query: 229 PT 234
PT
Sbjct: 472 PT 473
>SB_31885| Best HMM Match : RVT_1 (HMM E-Value=4.6e-28)
Length = 922
Score = 27.9 bits (59), Expect = 7.2
Identities = 14/38 (36%), Positives = 23/38 (60%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQGNAAES 488
DT+ VN V +FES++ I++ R K+ GQG ++
Sbjct: 184 DTSETGVNAVSKFESKKPNIKNYRR--KQRGQGKQCDN 219
>SB_6709| Best HMM Match : PCNA_C (HMM E-Value=9.8)
Length = 279
Score = 27.9 bits (59), Expect = 7.2
Identities = 16/54 (29%), Positives = 25/54 (46%)
Frame = +1
Query: 58 PPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAPYNK 219
PP + +P + N +++ P Y PP D + T RS S +V A Y +
Sbjct: 144 PPSSHSRSPNSPGSPNPTLFSH-PSYYPPPPLDFQAGTKRSASCMAVVEADYGR 196
>SB_6122| Best HMM Match : 7tm_1 (HMM E-Value=1.2e-26)
Length = 363
Score = 27.9 bits (59), Expect = 7.2
Identities = 9/40 (22%), Positives = 21/40 (52%)
Frame = +1
Query: 505 IFSGIVCAKFAAGVRAKILQRWALICWVKTLWAEAAKQLQ 624
+ + ++C F G+R + Q C++ + W E +K ++
Sbjct: 305 VINPLICFMFTEGLRKALKQMLTCGCFLNSTWIEPSKTME 344
>SB_47409| Best HMM Match : Ldl_recept_a (HMM E-Value=1.2e-17)
Length = 1571
Score = 27.5 bits (58), Expect = 9.6
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 2/46 (4%)
Frame = +1
Query: 112 TYNNAPGYVPPTTRDNKMDTSRSNSTNSVAIAP--YNKSKEPTLDA 243
TY NA + TSR N+T+SV P N +K+P L+A
Sbjct: 1277 TYVNATKEPKVDQNATAVPTSRENATSSVTSQPIVMNTTKQPVLNA 1322
>SB_54309| Best HMM Match : SH2 (HMM E-Value=5.1e-17)
Length = 1249
Score = 27.5 bits (58), Expect = 9.6
Identities = 18/53 (33%), Positives = 22/53 (41%)
Frame = +1
Query: 34 NFYYNTPPPPLRYPSNPATAIFTNAQTYNNAPGYVPPTTRDNKMDTSRSNSTN 192
+F PPPP R PS T A ++P TR NK SR+ N
Sbjct: 734 SFAPQRPPPPTRTPSGKDRPHSTTA----TPTLHIPERTRRNKKPKSRAEVVN 782
>SB_51678| Best HMM Match : zf-CCHC (HMM E-Value=0.0048)
Length = 351
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQG 473
DT+ +VN V +FES++ I++ R K+ GQG
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQG 214
>SB_43061| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 1396
Score = 27.5 bits (58), Expect = 9.6
Identities = 14/33 (42%), Positives = 22/33 (66%)
Frame = +3
Query: 375 DTNPINVNVVKRFESEETMIRHLIRLQKELGQG 473
DT+ +VN V +FES++ I++ R K+ GQG
Sbjct: 184 DTSETDVNAVSKFESKKPNIKNYRR--KQRGQG 214
>SB_21529| Best HMM Match : No HMM Matches (HMM E-Value=.)
Length = 367
Score = 27.5 bits (58), Expect = 9.6
Identities = 13/51 (25%), Positives = 28/51 (54%)
Frame = +3
Query: 96 IHQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRR 248
+HQ+ L Q + + +QQ+ H+ Q QH+ + QQ+Q+ ++++
Sbjct: 290 LHQQHQLHQHQQ---QHQYQQQHQHQHQHQHQQQQQQQQQQQQQQQQQQQQ 337
Score = 27.5 bits (58), Expect = 9.6
Identities = 12/50 (24%), Positives = 27/50 (54%)
Frame = +3
Query: 99 HQRANLQQRARVRAAYDARQQNGHEPQQQHKLGSDRTVQQEQRTDARRRR 248
HQ QQ+ + + + + Q+ H+ QQQ + + QQ+Q+ ++++
Sbjct: 294 HQLHQHQQQHQYQQQHQHQHQHQHQQQQQQQQQQQQQQQQQQQQQQQQQQ 343
>SB_11627| Best HMM Match : RNA_pol_Rpb2_1 (HMM E-Value=2.6)
Length = 496
Score = 27.5 bits (58), Expect = 9.6
Identities = 9/11 (81%), Positives = 10/11 (90%)
Frame = +1
Query: 52 PPPPLRYPSNP 84
PPPPLRYP +P
Sbjct: 419 PPPPLRYPPSP 429
Database: nematostella
Posted date: Oct 22, 2007 1:22 PM
Number of letters in database: 16,821,457
Number of sequences in database: 59,808
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 18,945,174
Number of Sequences: 59808
Number of extensions: 399746
Number of successful extensions: 1951
Number of sequences better than 10.0: 54
Number of HSP's better than 10.0 without gapping: 1562
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1861
length of database: 16,821,457
effective HSP length: 79
effective length of database: 12,096,625
effective search space used: 1584657875
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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